Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1405 ATGCATACATGCCTGTGCGCTTGGAAGCTTGCTAATCTACTACTTCCTCCTTTGACGCTGCAACATCAAAGAAAGATGGCTCTCATTGGGTTGCTCTTGCTGGGTTTTCTCACCATGTTCTCCTCTGCTCATGGCTATGGTGGAGGATGGATTAATGCTCACGCCACCTTCTATGGAGGTGGTGACGCATCAGGCACAATGGGTGGAGCATGTGGGTATGGAAATCTGTACAGCCAGGGGTATGGAACGAACACGGCTGCTCTGAGCACGGCTCTGTTCAACAACGGGCTGAGCTGTGGCTCATGCTATGAGATTAGGTGCGTGAATGACAGGAGGTGGTGCCTTCCAGGGTCCATAGTGGTCACAGCCACCAACTTCTGCCCACCAAACAACGCCTTGCCTAATAATGGAGGAGGATGGTGTAACCCTCCTCTCCACCATTTTGATCTCTCTCAGCCTGTCTTCCTCCGCATTGCCCAATACAGAGCTGGCATCGTTCCTGTGTCTTACAGAAGGGTGCCCTGCAGGAGAAGGGGAGGCGTAAGGTTCACAATCAATGGCCACTCCTACTTCAACCTGGTCCTCATCACAAACGTTGGTGGTGCTGGTGATGTACATGGTGTAGCCATCAAAGGGTCCAGAACTGGATGGATGCCAATGTCAAGAAACTGGGGGCAAAACTGGCAGAGCAACAACTATCTCAATGGCCAAAGCCTCTCCTTCAAGGTCACCACCAGTGATGGCCGTACTGTGGTGTCCTACAATGTTGCCCCACCTAACTGGTCCTTTGGCCAAACCTTCACTGGTGCCCAATTCCACTAG 822 0.5207 MHTCLCAWKLANLLLPPLTLQHQRKMALIGLLLLGFLTMFSSAHGYGGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDRRWCLPGSIVVTATNFCPPNNALPNNGGGWCNPPLHHFDLSQPVFLRIAQYRAGIVPVSYRRVPCRRRGGVRFTINGHSYFNLVLITNVGGAGDVHGVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSYNVAPPNWSFGQTFTGAQFH 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1405 273 CDD DPBB_EXPA_N 49 175 - -
Dere13g1405 273 PRINTS Expansin signature 119 129 IPR002963 GO:0009664
Dere13g1405 273 PRINTS Expansin signature 138 155 IPR002963 GO:0009664
Dere13g1405 273 PRINTS Expansin signature 80 94 IPR002963 GO:0009664
Dere13g1405 273 PRINTS Expansin signature 107 118 IPR002963 GO:0009664
Dere13g1405 273 PRINTS Expansin signature 191 212 IPR002963 GO:0009664
Dere13g1405 273 PRINTS Expansin signature 255 271 IPR002963 GO:0009664
Dere13g1405 273 PRINTS Expansin signature 179 191 IPR002963 GO:0009664
Dere13g1405 273 PRINTS Expansin signature 155 168 IPR002963 GO:0009664
Dere13g1405 273 PRINTS Expansin signature 226 247 IPR002963 GO:0009664
Dere13g1405 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 190 269 IPR007117 -
Dere13g1405 273 Pfam Expansin C-terminal domain 181 258 IPR007117 -
Dere13g1405 273 SUPERFAMILY PHL pollen allergen 177 269 IPR036749 -
Dere13g1405 273 FunFam Expansin 180 272 - -
Dere13g1405 273 Gene3D - 37 176 IPR036908 -
Dere13g1405 273 PRINTS Expansin/Lol pI family signature 163 179 IPR007118 GO:0005576
Dere13g1405 273 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Dere13g1405 273 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Dere13g1405 273 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Dere13g1405 273 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Dere13g1405 273 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Dere13g1405 273 SUPERFAMILY Barwin-like endoglucanases 34 198 IPR036908 -
Dere13g1405 273 FunFam Expansin 40 176 - -
Dere13g1405 273 Gene3D - 180 273 IPR036749 -
Dere13g1405 273 PANTHER EXPANSIN-A15 33 272 IPR002963 GO:0009664
Dere13g1405 273 SMART dpbb_1 85 170 IPR007112 -
Dere13g1405 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 180 IPR007112 -
Dere13g1405 273 Pfam Lytic transglycolase 85 170 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1405 Dere-ChrDere13 19106979 19109087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1405 25 273 Expansin Gene Family AT2G03090 81.928 2.00e-155 431