Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1404 ATGCTCCAAGGACCGATTTTGTCGGTCTCCCGGTCGTGTTTAACCAAAGCCTGTAATGCTATATGTACTCTGTCTGTCTCCTTGTCAACACTCGAAGTTGATCAAGGGATGGGCAGGGTGAAGCTAAAAATAAAGAGGCTGGAGAACACCAATGGCCGTCAGGCAACCTATGCTAAAAGGAGGCATGGAATTATGAAAAAGGCTTCAGAGTTATCTATACTGTGCGATATAGATATTATACTTCTCATGTTCTCTCCAAGTGGGAAGCCAGCATTATGCAGGGGGAAGCGCAGTGACATAGAGGAAATTATTGCAAAGTTTGCTCAACTAACTCCACAGGAAAGGGCAAAAAGGAAGTTGGAGAGTCTTGAAGCACTGAAGAAAACGTTTAAGAAGTTAGACCATGATGTAAATATACAAGAATTTCTGGGTACAAGCCATTGGACTGAGCCTGAGAAAATCAACAGCGTGGAACGATTGGGACAGATGGAAAATTCTCTCAGGGAGTCAATTAATCAACTTCGTTCCCGTAAGGAAATTATACCAAAGCAACAACTTGTGTCAGTGCAATGCACTAACCAGTTCAATGAGATGCATATTCCCTTCAGAATGAGCGTAGAGCAACATCTCCAACCTCTGTCATGGATTGCCAACAATGACAGCCAACATATGGTTTTACCAGACGACTCAAACTTGCTTCTCCACAAAGATGTAGAGTGCTCTGCAAGCTCCTCTTTCGGGAGTTATGCTAGTTATCTTGGCTCAAGTCCAAAAACAGATCTTTCTAATTCTGCGCAAGAAAATGTTGTCCTCAGTGACCTGACAAGTACTGCTTCTCTGAGACTACAATTAGGTGGGCAGTTTCCATACCTGCCATACAATTTCAATTTACTGAATGACATTAAGTTCCAGCCGGCTGCAGAGATGAATTCCCATGAAAACCTCATTGATTATTATCCAAATAAAAGCTTGGAAGCCCGTAGACTTGTGTATGAAACTAATCACCACAGATGGGCTTCCGCATCAGGGCCTTGTGCTGTTACTACCATGTTTGATGACCATTTGTATGCCCAGGCAAGTTTCCTCAAGTGA 1092 0.4295 MLQGPILSVSRSCLTKACNAICTLSVSLSTLEVDQGMGRVKLKIKRLENTNGRQATYAKRRHGIMKKASELSILCDIDIILLMFSPSGKPALCRGKRSDIEEIIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIQEFLGTSHWTEPEKINSVERLGQMENSLRESINQLRSRKEIIPKQQLVSVQCTNQFNEMHIPFRMSVEQHLQPLSWIANNDSQHMVLPDDSNLLLHKDVECSASSSFGSYASYLGSSPKTDLSNSAQENVVLSDLTSTASLRLQLGGQFPYLPYNFNLLNDIKFQPAAEMNSHENLIDYYPNKSLEARRLVYETNHHRWASASGPCAVTTMFDDHLYAQASFLK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1404 363 PRINTS MADS domain signature 39 59 IPR002100 GO:0003677|GO:0046983
Dere13g1404 363 PRINTS MADS domain signature 74 95 IPR002100 GO:0003677|GO:0046983
Dere13g1404 363 PRINTS MADS domain signature 59 74 IPR002100 GO:0003677|GO:0046983
Dere13g1404 363 Coils Coil 113 133 - -
Dere13g1404 363 Gene3D - 50 133 IPR036879 GO:0003677|GO:0046983
Dere13g1404 363 SMART madsneu2 37 96 IPR002100 GO:0003677|GO:0046983
Dere13g1404 363 FunFam Agamous-like MADS-box protein AGL30 50 132 - -
Dere13g1404 363 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 90 IPR002100 GO:0003677|GO:0046983
Dere13g1404 363 CDD MADS 38 90 - -
Dere13g1404 363 SUPERFAMILY SRF-like 38 131 IPR036879 GO:0003677|GO:0046983
Dere13g1404 363 ProSiteProfiles MADS-box domain profile. 37 89 IPR002100 GO:0003677|GO:0046983
Dere13g1404 363 PANTHER SERUM RESPONSE FACTOR HOMOLOG 39 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1404 Dere-ChrDere13 19099060 19104466 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1404 37 301 Type I MADS-box Gene Family AT2G03060 48.185 2.80e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dere13g1404 SRF-TF 2.4e-18 No_clan