Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1402 ATGAAGGCAGCTTGGCCAACCTGCTTCGTATATTCTTCCCAAGAACACCCAAATGGTCTCACTTCCTCTGACCTTTCTTCTTCTTCGATGGGAATGGTGTATGCAGACATGGGCTCTCTCTCTCTTTCTTCTTCTTCGTCTGAAATGGGGAATAATATTGGAGGTACAAGCTGGAGTGTTTTTCCTTTTCGGAGGGAACACCTTCCCAACACAGCAACTACTATTACTACTACAGATAATGATGCTTTGGAGTGTAAAGCTTCTGATTCTAGTACTGATCATGAAAATCCAATAGATCATAATCAAGAAAACCCTAATGACAATTCTGTGATCAGTACTGGAAAAGAGGTAGATTCTGGGCAGTCCAAGCTCTGTGCAAGAGGCCATTGGAGGCCTGCAGAAGATTCCAAGCTCAAGGAACTTGTGGCTCTCTATGGGCCTCAGAACTGGAATCTCATAGCAGAAAAGTTGGAAGGAAGATCAGGTAAGAGCTGTAGGCTGAGGTGGTTCAACCAGTTGGATCCAAGGATCAATAGGAGAGCGTTTAGTGAAGAAGAGGAGGAGAGGCTAATGCAGGCACATAGGATATATGGCAACAAATGGGCCATGATAGCTAGGCTATTCCCAGGAAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCTAGGAAGTACAGAGAACAATCCAGTGCTTACAGAAGGAGAAGGCTAAGCCAATCTGTTTACTCAAGATCGATGGAGGACCAAAATTCAAGCTTAGCCACAACCAGCAGAAGCGGCTCAGGGACAGAACCCCCACCACCACCACCCTATTGTCTCATCAGCAATAACAACATTATGGCAAGTATCCCATATGCACACTTCTATGCAGCAAATGGTGGGGTTGACTGTGGCTTCAATTCACCTCACATGACCAGTGGGATGGAAGTATTCCCAAGCAGCGGCAAGCAGGCCCCTCCTTCCCACACTGCCTTTTATGCTCATCACACACCCGTTGATCTCTTCTCTGGTGGTAGAAGCAATGACATGGTGGGTGGGGCTTTGGAGCAGAGCAGATACAGGGAAAACAGGCCAAGTGAATACGAACTTCATCCTCATGATCATCATCATCATCATTTAAATGCTTTCTTTTACCCTCATCATGATAATTTGAGCCCATATTCGATGCCAATGATGCAACAACAACAACAACCCAAGTCAAACATGAATCCCAATTTTCACAGCTTCTCCTCAAATTCCATGCCCCCCAACGTTTCTTCAAGAGAACCATCATCATCAGAGAACAGAGACGAAGTACTGAGTCTTCCTCCTCCTCCATTTATTGATTTTCTTGGGGTAGGAGCCACGTGA 1359 0.4533 MKAAWPTCFVYSSQEHPNGLTSSDLSSSSMGMVYADMGSLSLSSSSSEMGNNIGGTSWSVFPFRREHLPNTATTITTTDNDALECKASDSSTDHENPIDHNQENPNDNSVISTGKEVDSGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYSRSMEDQNSSLATTSRSGSGTEPPPPPPYCLISNNNIMASIPYAHFYAANGGVDCGFNSPHMTSGMEVFPSSGKQAPPSHTAFYAHHTPVDLFSGGRSNDMVGGALEQSRYRENRPSEYELHPHDHHHHHLNAFFYPHHDNLSPYSMPMMQQQQQPKSNMNPNFHSFSSNSMPPNVSSREPSSSENRDEVLSLPPPPFIDFLGVGAT 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1402 452 CDD SANT 181 221 IPR001005 -
Dere13g1402 452 SUPERFAMILY Homeodomain-like 127 220 IPR009057 -
Dere13g1402 452 MobiDBLite consensus disorder prediction 80 120 - -
Dere13g1402 452 MobiDBLite consensus disorder prediction 102 119 - -
Dere13g1402 452 FunFam MYB transcription factor 180 252 - -
Dere13g1402 452 ProSiteProfiles Myb-like domain profile. 127 173 IPR001005 -
Dere13g1402 452 MobiDBLite consensus disorder prediction 394 426 - -
Dere13g1402 452 Gene3D - 127 178 - -
Dere13g1402 452 ProSiteProfiles Myb-like domain profile. 174 224 IPR001005 -
Dere13g1402 452 MobiDBLite consensus disorder prediction 239 274 - -
Dere13g1402 452 PANTHER MYB PROTEIN-RELATED 119 360 - -
Dere13g1402 452 MobiDBLite consensus disorder prediction 239 264 - -
Dere13g1402 452 FunFam MYB transcription factor 127 178 - -
Dere13g1402 452 Pfam Myb-like DNA-binding domain 179 222 IPR001005 -
Dere13g1402 452 Pfam Myb-like DNA-binding domain 127 173 IPR001005 -
Dere13g1402 452 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 173 IPR017930 -
Dere13g1402 452 SMART sant 178 226 IPR001005 -
Dere13g1402 452 SMART sant 126 175 IPR001005 -
Dere13g1402 452 MobiDBLite consensus disorder prediction 86 101 - -
Dere13g1402 452 MobiDBLite consensus disorder prediction 394 442 - -
Dere13g1402 452 CDD SANT 130 171 IPR001005 -
Dere13g1402 452 Gene3D - 180 253 - -
Dere13g1402 452 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 174 228 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1402 Dere-ChrDere13 19064363 19066137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1402 30 244 MYB Transcription Factor Family AT1G69560 54.825 2.11e-75 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere13g1402 Myb_DNA-binding 2.1e-14 CL0123