Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1401 ATGTCGGAGGTTAAAGACCCGGCGATTAAGCTTTTTGGGAGGACGATTTCTCTGCCACTCAACCGCCACGCCTCCTCCTTAAACGATTCCTCGGATGATCATAGTCGTCCTTCGTCTTCATCTTCTCCCCGTGAAGTGAGCTCTGGAATTGACCACCAGCCAGAAGGGGTTCAGGAACTGTCAAAAAATGAACTCACCTCAGTACAAGATGATGATGCCTCCTACCAAAGCACAGAGGATTTAAAATCTCCCATAGCATCTTCAGGCATTTTTGGGAATCTGAAGACTCCCTCAGCAGAAGGAGAGACTTCTTTACTCAAATCTTCTAAACAGGGAGAACAGAGTGAGACAGGCACTTTAGAAGAAAAAACTCCAAAGAAACCTGACAAGATACTACCATGCCCACGATGCAATAGCATGGACACCAAATTCTGTTATTATAACAATTACAATGTCAATCAGCCCCGTCATTTCTGCAAGAACTGTCAGAGATACTGGACTGCTGGAGGAACCATGAGAAATGTGCCTGTAGGTGCTGGTCGTCGAAAGAACAAAAACTCTTCTGCCTCTCAGTATCGTCACATAATGGTTCCAAAGGCCCTTCAGATTGCCAAAGACAACACTGCCAATGGATTACATAACGCTGTTTTAGGAAATAGAGCAGCTGTCTTGACCTTTGGCTCTGATTCTCCTCTTTGTGATTCCATGGCTTCTGTATTAAACCTTGCAGAGAAAACACAGAATGGTGTTTTAAACGGATTTCATTTACCTGAACAGAATACTTTTGTTTCTTATGGTAGAGAAGATAATGGGAATGATCACTCCTTTGGAGCTTCTGTTGCAGCTTCAGCTTCATCAAAGGAGAAAGTCAACACTGCCTTGCAAGAACCAGTGGATAAAATTAATCATGGTTTCCCTCCTCAATTGCCTTGCTTCCCTGGTTCCTCCTGGCCTTATCAATGGAACTCAGCACAGTGGAGTTCTCTGGTGCCTCCTCCTGCATTCTGTCCGCAAGGCTATCCAGTATCGTTCTTTCCCAGTCCTACATATTGGGGTTGTACTTTACCTGCTTCCTGGAATATGCCATCCATCTCTGCACGATCTTCTGTTAACCACTCTGCCCCTAGCTCTGGCCCTAATTCACCTACTCTGGGAAAACATTCAAGGGAAGGGAACATCCTTAGTCCAGTCAACTCACCAAAAGAAAATCCAAATGTGGAGAGTAACAGTTCAGAAAATAGTGTCTTGATCCCCAAGACTCTAAGAATTGATGATCCCAATGAAGCTGCAAAGAGTTCTATATGGTCAGCATTAGGGATAAAGAATGAGAAGGCCAATTCTCTTAATGGAGGAGGCCTTTTCAAGGCATTTCCAGCTAAGGGAGGTGACAAGAACCATGCAGTTGAACCATCGCCAGTGTTGCAAGCCAACCCAGCAGCTTTATCGCGATCTCTTACTTTCCATGAGCAGACATAA 1476 0.4458 MSEVKDPAIKLFGRTISLPLNRHASSLNDSSDDHSRPSSSSSPREVSSGIDHQPEGVQELSKNELTSVQDDDASYQSTEDLKSPIASSGIFGNLKTPSAEGETSLLKSSKQGEQSETGTLEEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSASQYRHIMVPKALQIAKDNTANGLHNAVLGNRAAVLTFGSDSPLCDSMASVLNLAEKTQNGVLNGFHLPEQNTFVSYGREDNGNDHSFGASVAASASSKEKVNTALQEPVDKINHGFPPQLPCFPGSSWPYQWNSAQWSSLVPPPAFCPQGYPVSFFPSPTYWGCTLPASWNMPSISARSSVNHSAPSSGPNSPTLGKHSREGNILSPVNSPKENPNVESNSSENSVLIPKTLRIDDPNEAAKSSIWSALGIKNEKANSLNGGGLFKAFPAKGGDKNHAVEPSPVLQANPAALSRSLTFHEQT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1401 491 MobiDBLite consensus disorder prediction 20 48 - -
Dere13g1401 491 MobiDBLite consensus disorder prediction 20 129 - -
Dere13g1401 491 ProSitePatterns Zinc finger Dof-type signature. 134 170 IPR003851 GO:0003677|GO:0006355
Dere13g1401 491 PANTHER CYCLIC DOF FACTOR 2 1 490 IPR045174 GO:0003700|GO:0006355
Dere13g1401 491 MobiDBLite consensus disorder prediction 59 115 - -
Dere13g1401 491 Pfam Dof domain, zinc finger 129 186 IPR003851 GO:0003677|GO:0006355
Dere13g1401 491 ProSiteProfiles Zinc finger Dof-type profile. 132 186 IPR003851 GO:0003677|GO:0006355
Dere13g1401 491 MobiDBLite consensus disorder prediction 366 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1401 Dere-ChrDere13 19055390 19058425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1401 1 490 C2C2-Dof Transcription Factor Family AT3G47500 42.942 3.82e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Dere13g1401 zf-Dof 3e-32 No_clan