Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1400 ATGGATCAGCAAGATTTGCAAAATCGAAGTATGCATGTTGTTCTGTCCACTGATGCAAGGCCAAGGCTGAAATGGACTCCTGAGCTTCACCAACGATTTGTTGAGGCCATTAATCAGCTTGGAGGAGCAGATAAGGCAACCCCAAAGAGTGTTATGAGAGCGATGGGTATTCCAGGGCTTACTTTGTACCACCTGAAGAGCCACTTACAGGCATTTCCCTTTTCATGCAATGGTTGTACTAAATTCAGACTTGGGAAAGGCCAGCGACTAGAAACCTTCTCTGACAATAAACAAGAAGATCACAGAGAAATCCAGAGCAGTGATATCCATTGCAAAAGGGAAATCTGTGTTGGGACCCAGAATCAGATTACTGACTTGCAGATAGCCCAGGCTCTCCAAATGCAAATGGAAGTACAGAGGAAACTTAATGAACAAATAGAGGTGCAGAGACATCTGCAGCTTCGAATTGAAGCTCAAGAAAAGTATTTACAAGCAGTACTTAAGAAAGCCCATGAAGCACTTTCTGTACACAGTTATTCTTCTGCTTTTGGAATGGAACTTGCAAAAGCGGAGCTTTCTCAGTTAGTCTCCCTAATCAACAATGCTAGCCCAAGTTCTCCGATCTCGAAAGTGACAGAAACAAGAGGGTTGAGTTTTAAAGATGGGAAGAGGAAGCAAAGCAAAGGGACTATGTGTTCATTGGAGAGTTCTTTGACATCTTCTGAAAGCTCTGGTAGAAAGGAAGAGAAGCAGCCCAAGGAAAAAATAGGTGACTCTCAAAAATCTAATACTACTACTTCAGTTGAACTGCCATCAATGGCCATTCATTCAGTGGAAGTGGATGAAGCATCAAATGGAAATGCTAGAGAGGAATCAAGTGGGAGAAAAAGAAGTGGAGGAACCAATTATGGTGGGGAAAAATGTGACAACAAGCAGAGAAAAATTGAATTGTGGGAAATGCTTGACTTGAACAGGGCATATCAGAGTGATACTGATTCAAATTCTAAAGCAATTGACTTGAATTGCTGTTTAATGAGCAACTCTGGCTTTCTGTAA 1056 0.4176 MDQQDLQNRSMHVVLSTDARPRLKWTPELHQRFVEAINQLGGADKATPKSVMRAMGIPGLTLYHLKSHLQAFPFSCNGCTKFRLGKGQRLETFSDNKQEDHREIQSSDIHCKREICVGTQNQITDLQIAQALQMQMEVQRKLNEQIEVQRHLQLRIEAQEKYLQAVLKKAHEALSVHSYSSAFGMELAKAELSQLVSLINNASPSSPISKVTETRGLSFKDGKRKQSKGTMCSLESSLTSSESSGRKEEKQPKEKIGDSQKSNTTTSVELPSMAIHSVEVDEASNGNAREESSGRKRSGGTNYGGEKCDNKQRKIELWEMLDLNRAYQSDTDSNSKAIDLNCCLMSNSGFL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1400 351 MobiDBLite consensus disorder prediction 242 257 - -
Dere13g1400 351 Pfam Myb-like DNA-binding domain 22 70 IPR001005 -
Dere13g1400 351 Pfam MYB-CC type transfactor, LHEQLE motif 126 172 IPR025756 -
Dere13g1400 351 Coils Coil 129 149 - -
Dere13g1400 351 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 264 IPR044848 GO:0003700
Dere13g1400 351 NCBIfam myb-like DNA-binding domain, SHAQKYF class 21 72 IPR006447 GO:0003677
Dere13g1400 351 SUPERFAMILY Homeodomain-like 19 74 IPR009057 -
Dere13g1400 351 MobiDBLite consensus disorder prediction 258 272 - -
Dere13g1400 351 Gene3D - 19 84 - -
Dere13g1400 351 FunFam Two-component response regulator 16 77 - -
Dere13g1400 351 MobiDBLite consensus disorder prediction 203 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1400 Dere-ChrDere13 19038675 19040189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1400 11 277 G2-like Transcription Factor Family AT1G69580 46.237 6.71e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere13g1400 Myb_DNA-binding 1.3e-06 CL0123