Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1399 ATGCATCTCCCTTCTCATTTCTACATCTTTCGACAATCTTCTTTCGTATCAGCGGGCGCCCGCCTTCTCGTCTCTGTGTTGCCCCTTCTTATATCCCTATCCCTCTTTACTCTTCTTCTTCAGTACCCTACAGTTCTTCACTACTGTGCAATCTGTAATCCATTACCCCCTTTCCTCTTCCCTATTTTTTTTCTGAGGAAAAGACCATTTTCATTTCAATTCATGGCTTCTGAGCCCGAGGTCTCTGAGACTTCGTTTCCGTCCGAAAGGTCGCTCGGATACAGAGAGGTTTCTCTGTTCTTGCCCTTCATCTTCGGCTTCTCCACCGCTTCTCCTAGACGAGATAGTCAAACCCCAGATCAAGAAACCACAAATGCGGAAAATACCCATCATGAAAGAGTCATCATTATCAACCCTTTTACGCAAGGTATGGTGGTGATTGACGGTACTTCGAGCCTTGAGACTCTGTTTCGTGAAATAGGTGCTGAAGATGGGCGACCACCGGCGTCGAAAGAATCCATAGACGCGATGCCGTGTGTGGAAATCGGAGAAGGCGAAGATGGGGAGTGTGTGATTTGTTTGGAGGAGTGGGAGGTTGGTGGGGTGGCGAAGGAGATGCCTTGTAAGCATAAATTTCATCAAAGTTGCATAGAGAAGTGGTTGAGGATTCATGGGTCTTGCCCTGTTTGTAGGTATCAGATGCCTGTGGATGAGAAAGAAGTGGTCAAGAGAGATGAAGAAGAAGAAGAAGGAGGAGGGGGAGAGAGAAGGAGGGTTGGCAGAGAAGTTTGGGTTAGCTTCTCTTTTAGAAGTGGAAATACGAACCAAGCTCCTTCCGGTGATTCCACTGGTTCTTCAAGCCCAAGAGGTGACGCTGAGGTAGAGAGTTAG 891 0.4747 MHLPSHFYIFRQSSFVSAGARLLVSVLPLLISLSLFTLLLQYPTVLHYCAICNPLPPFLFPIFFLRKRPFSFQFMASEPEVSETSFPSERSLGYREVSLFLPFIFGFSTASPRRDSQTPDQETTNAENTHHERVIIINPFTQGMVVIDGTSSLETLFREIGAEDGRPPASKESIDAMPCVEIGEGEDGECVICLEEWEVGGVAKEMPCKHKFHQSCIEKWLRIHGSCPVCRYQMPVDEKEVVKRDEEEEEGGGGERRRVGREVWVSFSFRSGNTNQAPSGDSTGSSSPRGDAEVES 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1399 296 Pfam Ring finger domain 189 231 IPR001841 -
Dere13g1399 296 SMART ring_2 190 230 IPR001841 -
Dere13g1399 296 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 114 235 - -
Dere13g1399 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 237 IPR013083 -
Dere13g1399 296 MobiDBLite consensus disorder prediction 269 296 - -
Dere13g1399 296 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Dere13g1399 296 MobiDBLite consensus disorder prediction 269 290 - -
Dere13g1399 296 SUPERFAMILY RING/U-box 178 236 - -
Dere13g1399 296 FunFam E3 ubiquitin-protein ligase RNF181 157 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1399 Dere-ChrDere13 19036959 19037849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1399 75 287 C3H Transcription Factor Family AT1G26800 48.649 4.02e-63 196