Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1392 ATGGCTGAGTGTCGCATTTGTCAAGAGGAGGACAGCGTTAAGAATTTGGAGACTCCTTGTGCATGCAGCGGGAGTCTAAAGTTTGCTCACAGAAAGTGCGTTCAGCATTGGTGCAATGAGAAAGGCGACATAATCTGTGAGATATGTCATCAGCCTTATCAACCTGGTTATACTGCCCCAACACCTCGCCCTCATCCTGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGGACACCTTTGGACTTGCGTGATCCTCGACTTTTGGCAATTGCAGAGGCAGAACGCCAATTCTTGGAAGCTGAATATGATGAGTATGCTGCTTCAAATGCCAGTGGAGCTGCTTTTTGTCGCTCAGCTGCTCTAATTTTAATGGCTCTTTTACTCTTGCGGCATGCACTGTCTGTTACAGATTCTGATTCTGATGATGACCCCTCTACTTTTTTCTCTCTTTTCTTACTTCGGGCAGCTGGATTCCTTTTACCCTGCTACATCATGGCTTGGGTAATCAGTATTTTGCAGCGCCGGCGACAAAGACAAGAGGCGGCAGCATTGGCAGCGACCCAAGTTGCTTTTGTTTTACAATCCGGCCAGCGTAGGGGTCTGCAATTTGCGATAGCACCAGGACCCACGGTGAATTCACAACAGGAACAAGTGTAG 669 0.4768 MAECRICQEEDSVKNLETPCACSGSLKFAHRKCVQHWCNEKGDIICEICHQPYQPGYTAPTPRPHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDSDSDDDPSTFFSLFLLRAAGFLLPCYIMAWVISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPTVNSQQEQV 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1392 222 CDD RING_CH-C4HC3_MARCH 4 50 - -
Dere13g1392 222 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 2 183 IPR033275 -
Dere13g1392 222 SMART ringv_2 3 50 IPR011016 GO:0008270
Dere13g1392 222 Pfam RING-variant domain 4 49 IPR011016 GO:0008270
Dere13g1392 222 Pfam Protein of unknown function (DUF3675) 55 173 IPR022143 -
Dere13g1392 222 FunFam RING/FYVE/PHD zinc finger protein 1 60 - -
Dere13g1392 222 Coils Coil 92 112 - -
Dere13g1392 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 59 IPR013083 -
Dere13g1392 222 ProSiteProfiles Zinc finger RING-CH-type profile. 1 56 IPR011016 GO:0008270
Dere13g1392 222 SUPERFAMILY RING/U-box 3 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1392 Dere-ChrDere13 18969475 18972303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1392 3 49 C3H Transcription Factor Family AT2G37950 42.000 1.93e-06 45.1