Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1390 ATGGACTTGACCCCCAACAGCCGCTCAACCCACTTAGATACTCTGCATTCTCCAACCCCACCACCACCACCACCACCCACCCAACCCACTAATGCCTCCAAGTCTCTGTCTTTCACCAACGGCTCTCTCAGGCGCCACCACCCTCCGGCGGCGGCTCCGGCCACGGTGGTTTCCTACAAGGAGTGCCTCAAGAACCACGCGGCCACCATAGGCGGCCACGCGCTTGATGGCTGCGGTGAGTTCATGCCCTCGGCGGCCTCCGACTCCGGTGACCCACGTTCCCTCAAATGTGCCGCGTGTGGCTGCCACCGCAACTTCCACCGCCGTGAACCACAAGAATTTCACTCCAGCCCCAACTTTTTAAGTTGCTTCTATCCTCCGCCGCCACCGTCTCTAGCTCACCGGGGGTTAAGCCCGAGTACGAGTCCAAGCCCGAGCCTGAGCAGCGCCAGTCCAAGCCCTTTATCGAGCCCATCGCCGCCGCCGGTCTCGCATTTCCCACCTTCCTACCACACATCGGCACCCCATATGCTGTTAGCGCTCGGCAACGCCTATTCTGGACCGTCCGATGAGCAGCATCGGAGCTTCATCAATTCTTCGGCGATGAAGATGCAGAAGGAGAACCCAAGTGGGAAAAAGAGGTACAGAACGAAGTTCAGCCAGGAGCAGAAAAAGAAGATGTATTTGTTCTCTGAGAAATTGGGTTGGAGAATGCAAAGAGGGGATGATAAAATGCTCCAAGACTTCTGCAATGAGGTTGGGGTTTCTAGAGGGGTCTTCAAGGTTTGGATGCACAACAACAAGAACACTTTCAGGAAAAAATGGGAAATTGGGAATACCCATACTGAGAAAATCAACGAAGGTGATGACAATGGGGGTAGTAGAAGTGGGTTTGATAGCGATATTAACAATGACAATCACAGGAATGAAGGTAGCTGTATTAATCTTCATGTTTCTGTTAATGGATCTTCGTAA 975 0.5323 MDLTPNSRSTHLDTLHSPTPPPPPPPTQPTNASKSLSFTNGSLRRHHPPAAAPATVVSYKECLKNHAATIGGHALDGCGEFMPSAASDSGDPRSLKCAACGCHRNFHRREPQEFHSSPNFLSCFYPPPPPSLAHRGLSPSTSPSPSLSSASPSPLSSPSPPPVSHFPPSYHTSAPHMLLALGNAYSGPSDEQHRSFINSSAMKMQKENPSGKKRYRTKFSQEQKKKMYLFSEKLGWRMQRGDDKMLQDFCNEVGVSRGVFKVWMHNNKNTFRKKWEIGNTHTEKINEGDDNGGSRSGFDSDINNDNHRNEGSCINLHVSVNGSS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1390 324 MobiDBLite consensus disorder prediction 154 168 - -
Dere13g1390 324 MobiDBLite consensus disorder prediction 1 15 - -
Dere13g1390 324 MobiDBLite consensus disorder prediction 1 52 - -
Dere13g1390 324 FunFam Zinc-finger homeodomain protein 2 199 273 - -
Dere13g1390 324 SUPERFAMILY Homeodomain-like 202 273 IPR009057 -
Dere13g1390 324 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 270 - -
Dere13g1390 324 MobiDBLite consensus disorder prediction 134 169 - -
Dere13g1390 324 MobiDBLite consensus disorder prediction 135 153 - -
Dere13g1390 324 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 110 IPR006456 -
Dere13g1390 324 MobiDBLite consensus disorder prediction 16 30 - -
Dere13g1390 324 Pfam ZF-HD protein dimerisation region 57 111 IPR006456 -
Dere13g1390 324 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 59 110 IPR006456 -
Dere13g1390 324 MobiDBLite consensus disorder prediction 282 310 - -
Dere13g1390 324 NCBIfam homeobox domain, ZF-HD class 212 269 IPR006455 -
Dere13g1390 324 Gene3D - 198 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1390 Dere-ChrDere13 18948610 18949584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1390 49 271 ZF-HD Transcription Factor Family AT1G69600 49.356 4.88e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere13g1390 ZF-HD_dimer 3e-29 No_clan