LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere13g1371	ATGGAAGAAGCAGATCATCCTAATGGGATCCGCAGACCCAATTTCCCGTTGCAGCTGTTAGAGAAAAAAAATGGTGAAGAAGAAGGAGATGCTGCTGCTGCTGCTAAAGCTTGCTCCACCAACCCGACCCGACCCAATAACCTCCAGCTCACCGACCAACCCAAGAAGCCGCCTCCTAAGCGTGCCTCAACCAAGGACAGGCACACAAAGGTCGACGGCCGGGGCCGTCGGATCCGCATGCCTGCTGCTTGTGCCGCCAGAGTGTTTCAGCTGACGAGGGAGCTCGGCCACAAGTCCGACGGTGAGACAATCGAGTGGCTCCTGCAGCAGGCGGAGCCCGCAGTGATCGCAGCCACGGGGACTGGGACCATTCCTGCCAATTTCACCTCCCTGAACATCTCGCTCCGCAGCTCCGGCTCCACCGTGTCGGCGCCGTCACACTACTATAGGGGTAATTATAGTAATTACTTCAGTCCCAGCTTTTTTTCTTCGACGACGCAGTTGAGAAACGCGGTCATGGATGACTCTAAAAGGATCTTGTTTCCCGGCGCCGTTGGGTTTCCTTCTTCTTCCGCAGAGAATTCTTCCGTGAGTAATTTTAACTCCGTTAGTAATGTGAATGCCATACTACAGCTATCAAAGCAAGAGCTCAGGGAAGAAACTGGTGTAGGCGGCGGCGGCCTTGAATCTACGACAACAGAGTCCGAGGGAAGTTTAGGAAGAAAGAGAAGGCCGATAGAGCAGGAACTCTCACAGAGTCAGATGGGCAGTTATTTGTTACAATCGAGCACGGGGTCAATTCCAGCGAGTCATTCTTCGGTTCCGGCGACGTTTTGGACGGTAAGTAGCACCGGTAATAACCAATCCATGGGCGGTGGCGGTGGTGGCAGTAACGGCGGAAACAGCGGTGGTGATCCCATCTGGGCAATACCCTCTGTCGGGAATTATAATAATATGTACAGAGGGGCCATGTCTAGTGGTGGGATTCATTTTATGAATTTTGGTTCTCCAATGCCTCTAATGGGTGGCCAGCAATTAGGTGGTGCAGTGATGAACGAAAGCAACTTAGGCATGCTCGCAGCCCTAAATGCATATAGGCAGATTCCGGCGAACGGCGTCTCGGAGTCTCCGGCCATTACCGGGCATGGAGGAGACGAACATTCCTGA	1167	0.5321	MEEADHPNGIRRPNFPLQLLEKKNGEEEGDAAAAAKACSTNPTRPNNLQLTDQPKKPPPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTVSAPSHYYRGNYSNYFSPSFFSSTTQLRNAVMDDSKRILFPGAVGFPSSSAENSSVSNFNSVSNVNAILQLSKQELREETGVGGGGLESTTTESEGSLGRKRRPIEQELSQSQMGSYLLQSSTGSIPASHSSVPATFWTVSSTGNNQSMGGGGGGSNGGNSGGDPIWAIPSVGNYNNMYRGAMSSGGIHFMNFGSPMPLMGGQQLGGAVMNESNLGMLAALNAYRQIPANGVSESPAITGHGGDEHS	388

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere13g1371	388	PANTHER	TRANSCRIPTION FACTOR TCP4-RELATED	35	357	IPR005333	GO:0003700
	Dere13g1371	388	MobiDBLite	consensus disorder prediction	39	53	-	-
	Dere13g1371	388	MobiDBLite	consensus disorder prediction	218	243	-	-
	Dere13g1371	388	MobiDBLite	consensus disorder prediction	58	72	-	-
	Dere13g1371	388	ProSiteProfiles	TCP domain profile.	64	118	IPR017887	-
	Dere13g1371	388	Pfam	TCP family transcription factor	63	192	IPR017887	-
	Dere13g1371	388	MobiDBLite	consensus disorder prediction	1	72	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere13g1371	Dere-ChrDere13	18780761	18781927	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere13g1371	55	345	TCP Transcription Factor Family	AT3G47620	45.897	3.12e-55	187

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TCP	Dere13g1371		TCP	7.2e-38	No_clan