Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere13g1367 | ATGGCTGATCTTCAAAGAACGGTTTTCGGCGACAGGAATATCGACCAGGCAATTACATCTCTTAAGAAAGGCGCATATCTGCTAAAGTATGGGCGCCGAGGAAAACCAAAGTTCTGCCCATTTAGGCTTTCCAATGATGAGTCTCTACTCATATGGTACTGTGGGAAGGATGAGAAACAACTAAAGCTCAGTATTGTTTCAAAAATCATTCCTGGGCAACGAACTGCCATATTTCAGCGGTATCCTCGGCCTGAAAAGGAATATCAATCATTTTCTCTTATGTACAATGATAGGTCCTTGGATTTGATTTGTAAGGACAAGGATGAAGCTGAAATCTGGTTTGTCGGTCTTAAGGCATTAGTTACCCGAGGCAAACATCAAAAGCAGAGATATGAATCAAGATGTGAAAGTGCTTGTTCTGGCAGTCCACAAAGTCGCACACAAAGAAATTCTCCATTGATTACACCATTTGACCCAGTAGACATTGAAGGATTTTCTTTTGACAATACTTCACAAAATAGATTGGGAAAGGCTTTCTCTGAAATTATTTCATATACAGCCACTGGCAAGAGTTCCTGTCAATCTGAATTAAATGCAAATTCCTTGTCCTCTGGATCTGTGGATTACTCAAATGATCGAAATTCTACAGCCGAGCCAATTCGAGTTAGTTTATCCAGTGCTGTAAGTTCATCCAGTCATAGTTCTTATCAAGAAGATTTTGATGCTATAGGTGATGTTTATATATGCGGAGAAGGTATTGGTGATGGAATTCTTGGTGGTGGTTTGCATAGATTTGGAACCTTTTCTAGTTCTGATATGGATGCTTTTCTCCCCAAGGCATTAGAATCAAAAGTAGTTCTGGATGTTCAGAGTATTGCTTGTGGTTACAAACATGCTGCTCTAGTTACCAAGCAAGGAGAGATATATAGTTGGGGGGAAGAGTCAGGAGGTAGGCTTGGGCATGGTGTAGAAGTTGATGTTTCCCACCCTAAGCTCATTGACACTCTTAGTGGCGTAAATATTGAATTAGTAGCATGCGGGGAATATCATACTTGTGCTGTCACATTTTCTGGGGATCTTTATACTTGGGGTGATGGTACTCACAATTCTGGTTTGCTTGGGCATGGAAATGAAGTAAGTCACTGGATTCCTAAGAGAGTAAGCGGTGACATGGAAGGTCTACATGTAACCTATGTGTCTTGTGGACCTTGGCACACGGCTGTTGTGACATCTTCTGGCCAGTTGTTCACATTTGGGGATGGATCTTTTGGTGCCTTAGGTCAAGGAGATCTTAGGAGCACAAATATTCCACGGGAAGTAGAAACTTTGAAAGGGTTGAGAACAACCAGGGTTTCCTGTGGTGCTTGGCACACTGCTGCTATAGTTGAGGTGGCAACTGAATCTATGGATTCTTCTAAGCACTCTCCTAGTGGAAAACTATTCACATGGGGTGATGGAGACAAAGGCCGACTTGGACATGGTGATAATGAACTTAGACTAGTTCCTGAGTGTGTTACTGCATTGGATAGTCAAAATATTTGTCAAGTGAATTGTGGTCACGATCTTACTATTGCTTTGACAACCTCAGGACACGTATATACAATGGGCAGTACTGCTTATGGGCAACTTGGCAGTCCTGCAGCTGATGGAAGACTTCCTGCACGGGTTGAAGGTAAAATTGCTGGCAGTTTCATAATAGATATTGCCTGTGGTTCATACCATGTTGCAGTCCTGACTTCCAAGGCAGATGTTTACACTTGGGGAAAGGGTTTGAATGGGCAGCTAGGTCATGGAGATAATGATCACCGAAACACACCTACCCTCGTTAAGTTTTTTAAAAATAAGCAAGCGACGAGTGTTATTTGTGGTTCAAACTTCACTGCTATTGTATGTCCTCATAAATGGGTATCAAGTGCTGACCATTCTGTGTGCTCTGACTGTCACAATACTTTTGGATTCCGAAGAAAACGTCATAATTGTTACAACTGTGGACTAGTTTTTTGCAAAGCATGCTGCAGTAGAAAATCTATTAAAGCATCCCTTGCTCCAAATTCCAATAAGCCATATCGTGTTTGTGATGACTGCTATTCTAAACTTAAGAAAATCACAGACTCTGTTTCCTTGGTGAAAACCTTTACATTGAAAAGTTCGCCTGACTCATGGGCTAGTAAATTACAGGGAAAACTATTAAGGCTTTCCTCTTTTGGCTCTACTGTTCAAGCAGAAAGCAGGCACTCAAAGATCCCAGTATCAAATCATAGCCATGTTTTTCCAGCTTTGAATGTAAAACTACAATTGGGGGAATTTACTCCTCCAAACACATCAAATTCTGTCCCTGGAGCATTAAAGAAGCCGCTTTCATTTTCTGTGCCTGCCAGTAGTATGAACTCAGAAGCATCATCCCCAGTTTCAGAAAAGTGCAGCCCACGACAGTCTTGTGAAGATGTCCATGATGATTCAAAGCACAAAAATGACATTTTAAGTCAAGAAGTTATAAGTTTAAGGGCACAGGTTGAAGATCTCACTCGTAAATCTAAGCATCTTGAGGCTGAACTTGAGAGGACATCAAAGGAATTGAAGGAAGTGACTGCAGTAGCTGCAGATGAAGCTGAGAAGTGTAAATCTGCTAAGGAGGTTATAAAGTCACTGACTGCTCAGTTGAAGGAAATGGTGCAAAGAGTTCCAGAAGGAGAAAAGGCCAACTCCAGTGCAGACTTCTCTGCTGAAATTAGTGCTACTACTGATGTTCTAATTCAGTCCTTAGATGAGAGCCATAAAACAAACAGTACCACTCCTGAAACTGAGTCCAACGGTAATGCAGTAAATCAGATATTGCCTAATGTTTCCAAAGCACAAAGTGGGAAGTTAGAGTGGGTGGTGCAAGATGAACCAGGCGTATACATAAGTTTGTCCTCCTTGCCAGGCGGTGGTAATGAACTTAAACGTGTGCGCTTCAGTCGGAAACATTTCACAAAACAAGAAGCTGAAAAGTGGTGGGCTGAAAATGGAACCAAAGTGTTGGAGCGGCTCAATATTGTTGCTTCATAG | 3048 | 0.4173 | MADLQRTVFGDRNIDQAITSLKKGAYLLKYGRRGKPKFCPFRLSNDESLLIWYCGKDEKQLKLSIVSKIIPGQRTAIFQRYPRPEKEYQSFSLMYNDRSLDLICKDKDEAEIWFVGLKALVTRGKHQKQRYESRCESACSGSPQSRTQRNSPLITPFDPVDIEGFSFDNTSQNRLGKAFSEIISYTATGKSSCQSELNANSLSSGSVDYSNDRNSTAEPIRVSLSSAVSSSSHSSYQEDFDAIGDVYICGEGIGDGILGGGLHRFGTFSSSDMDAFLPKALESKVVLDVQSIACGYKHAALVTKQGEIYSWGEESGGRLGHGVEVDVSHPKLIDTLSGVNIELVACGEYHTCAVTFSGDLYTWGDGTHNSGLLGHGNEVSHWIPKRVSGDMEGLHVTYVSCGPWHTAVVTSSGQLFTFGDGSFGALGQGDLRSTNIPREVETLKGLRTTRVSCGAWHTAAIVEVATESMDSSKHSPSGKLFTWGDGDKGRLGHGDNELRLVPECVTALDSQNICQVNCGHDLTIALTTSGHVYTMGSTAYGQLGSPAADGRLPARVEGKIAGSFIIDIACGSYHVAVLTSKADVYTWGKGLNGQLGHGDNDHRNTPTLVKFFKNKQATSVICGSNFTAIVCPHKWVSSADHSVCSDCHNTFGFRRKRHNCYNCGLVFCKACCSRKSIKASLAPNSNKPYRVCDDCYSKLKKITDSVSLVKTFTLKSSPDSWASKLQGKLLRLSSFGSTVQAESRHSKIPVSNHSHVFPALNVKLQLGEFTPPNTSNSVPGALKKPLSFSVPASSMNSEASSPVSEKCSPRQSCEDVHDDSKHKNDILSQEVISLRAQVEDLTRKSKHLEAELERTSKELKEVTAVAADEAEKCKSAKEVIKSLTAQLKEMVQRVPEGEKANSSADFSAEISATTDVLIQSLDESHKTNSTTPETESNGNAVNQILPNVSKAQSGKLEWVVQDEPGVYISLSSLPGGGNELKRVRFSRKHFTKQEAEKWWAENGTKVLERLNIVAS | 1015 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere13g1367 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 308 | 324 | IPR000408 | - | |
| Dere13g1367 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 358 | 374 | IPR000408 | - | |
| Dere13g1367 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 399 | 415 | IPR000408 | - | |
| Dere13g1367 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 577 | 598 | IPR000408 | - | |
| Dere13g1367 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 415 | 429 | IPR000408 | - | |
| Dere13g1367 | 1015 | PRINTS | Chromosome condensation regulator RCC1 signature | 519 | 537 | IPR000408 | - | |
| Dere13g1367 | 1015 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 648 | 706 | IPR013083 | - | |
| Dere13g1367 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 478 | 529 | IPR000408 | - | |
| Dere13g1367 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 582 | 633 | IPR000408 | - | |
| Dere13g1367 | 1015 | MobiDBLite | consensus disorder prediction | 791 | 821 | - | - | |
| Dere13g1367 | 1015 | Gene3D | - | 165 | 368 | IPR009091 | - | |
| Dere13g1367 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 530 | 581 | IPR000408 | - | |
| Dere13g1367 | 1015 | CDD | PH_PLC_plant-like | 12 | 122 | - | - | |
| Dere13g1367 | 1015 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 451 | 461 | IPR000408 | - | |
| Dere13g1367 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 358 | 412 | IPR000408 | - | |
| Dere13g1367 | 1015 | CDD | FYVE_like_SF | 644 | 696 | - | - | |
| Dere13g1367 | 1015 | Pfam | FYVE zinc finger | 634 | 700 | IPR000306 | GO:0046872 | |
| Dere13g1367 | 1015 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 57 | 886 | - | - | |
| Dere13g1367 | 1015 | SMART | fyve_4 | 632 | 701 | IPR000306 | GO:0046872 | |
| Dere13g1367 | 1015 | Coils | Coil | 824 | 893 | - | - | |
| Dere13g1367 | 1015 | SUPERFAMILY | FYVE/PHD zinc finger | 634 | 709 | IPR011011 | - | |
| Dere13g1367 | 1015 | Gene3D | - | 13 | 131 | IPR011993 | - | |
| Dere13g1367 | 1015 | SUPERFAMILY | RCC1/BLIP-II | 243 | 635 | IPR009091 | - | |
| Dere13g1367 | 1015 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 399 | 409 | IPR000408 | - | |
| Dere13g1367 | 1015 | Gene3D | - | 369 | 647 | IPR009091 | - | |
| Dere13g1367 | 1015 | ProSiteProfiles | BRX domain profile. | 956 | 1011 | IPR013591 | - | |
| Dere13g1367 | 1015 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 215 | 466 | - | - | |
| Dere13g1367 | 1015 | MobiDBLite | consensus disorder prediction | 791 | 808 | - | - | |
| Dere13g1367 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 413 | 464 | IPR000408 | - | |
| Dere13g1367 | 1015 | Pfam | Transcription factor BRX N-terminal domain | 868 | 895 | IPR027988 | - | |
| Dere13g1367 | 1015 | SUPERFAMILY | PH domain-like | 14 | 121 | - | - | |
| Dere13g1367 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 306 | 357 | IPR000408 | - | |
| Dere13g1367 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 412 | 461 | IPR000408 | - | |
| Dere13g1367 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 477 | 526 | IPR000408 | - | |
| Dere13g1367 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 357 | 409 | IPR000408 | - | |
| Dere13g1367 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 529 | 578 | IPR000408 | - | |
| Dere13g1367 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 306 | 354 | IPR000408 | - | |
| Dere13g1367 | 1015 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 583 | 629 | IPR000408 | - | |
| Dere13g1367 | 1015 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 957 | 1009 | IPR013591 | - | |
| Dere13g1367 | 1015 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 638 | 700 | IPR017455 | - | |
| Dere13g1367 | 1015 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 244 | 305 | IPR000408 | - | |
| Dere13g1367 | 1015 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 292 | 302 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere13g1367 | Dere-ChrDere13 | 18723597 | 18740594 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere13g1367 | 954 | 1012 | Major Intrinsic Protein MIP | AT1G31880 | 54.237 | 3.60e-16 | 79.7 |