Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1366 ATGCTCTGCTTCATTTCCGGTGAGGCTTACGCAGAGTGTTGATGGGAAAACATCAAGAAGCCTCGGCGTCCCTACGAGAAGGAGCGTCTGGACCACGAGCTCAGGCTCGTTGGGGAGTATGGCCTTCGCTGCAAGAGGGAGCTGTGGAGGGTTCAATATGCACTCAGCCGGATCCGTAATGCGGCTAGGATGCTTCTCACCCTCGATGAGAAGAACCCTCGTCGTATCTTCGAGGTTGAAGCTCTTCTAAGGAGGATGAATAGGTACGGTCTGCTCGATGAGAGCCAGAACAAACTCGATTACGTCTTGGCTCTTACCGTCGAGAATTTCCTCGAGCGCCGACTCCAGACCCTAGTCTTCAAATCCGGCATGGCTAAGTCAATCCACCACGCTAGAGTTTTGATCAGGCAGAGGCACATCAGGGTAGGAAGGCAGGTGGTGAATATTCCCTCGTTTATGGTGAGGGTCGACTCACAGAAACACATTGATTTCTCTCTAACGAGTCCCTTGGGTGGTGGACGTCCTGGAAGGGTGAAGCGAAAGAACCAAAGGGCAGCTGCTAAGAAGGCTGCCGGGGGTGATGGAGATGAGGAAGATGAAGAGTGA 606 0.5297 MLCFISGEAYAECXWENIKKPRRPYEKERLDHELRLVGEYGLRCKRELWRVQYALSRIRNAARMLLTLDEKNPRRIFEVEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQRAAAKKAAGGDGDEEDEE 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1366 201 PANTHER 30S 40S RIBOSOMAL PROTEIN 19 187 IPR022801 GO:0003735|GO:0015935|GO:0019843
Dere13g1366 201 ProSiteProfiles S4 RNA-binding domain profile. 113 187 - -
Dere13g1366 201 SMART Ribosomal_S4_2 9 112 IPR001912 GO:0019843
Dere13g1366 201 MobiDBLite consensus disorder prediction 167 201 - -
Dere13g1366 201 Pfam S4 domain 113 156 IPR002942 GO:0003723
Dere13g1366 201 SMART s4_6 113 184 IPR002942 GO:0003723
Dere13g1366 201 NCBIfam 30S ribosomal protein S4 19 170 IPR005710 GO:0003735|GO:0006412|GO:0015935
Dere13g1366 201 CDD S4 113 157 - -
Dere13g1366 201 Pfam Ribosomal protein S4/S9 N-terminal domain 19 112 IPR001912 GO:0019843
Dere13g1366 201 SUPERFAMILY Alpha-L RNA-binding motif 19 163 - -
Dere13g1366 201 ProSitePatterns Ribosomal protein S4 signature. 111 135 IPR018079 GO:0019843
Dere13g1366 201 Gene3D - 112 169 IPR036986 GO:0003723
Dere13g1366 201 FunFam 40S ribosomal protein S9 112 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1366 Dere-ChrDere13 18718870 18720705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1366 16 191 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 89.773 1.09e-115 325