Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1358 ATGATGGCCTTCTTTCCAGCAAATTTCATATTACAAAACCATCATCAAGAAGACCACCATCAACCTCCACCTTCTCTCAACTCAATCCTACCTCAAGATTATCATGGGGGAGCATCGTTTCTTGGGAAGAGATCTATGACATTTTCAGGGATTGAACTTGGTGGTGAAGAAGCTAATAATGGTGATGAAGACTTGTCCGATGATGGATCTCAGGCAGGGGAGAAGAAAAGGAGGCTTAACATGGAACAGGTGAAGACACTAGAGAAGAACTTTGAGCTTGGAAACAAGCTTGAACCTGAGAGAAAAATGCAGCTGGCTAGGGCTCTTGGGCTGCAACCCAGGCAGATCGCTATATGGTTCCAGAACAGAAGGGCTAGATGGAAGACTAAGCAATTGGAGAAAGACTATGATCTTCTCAAAAGACAGTACGAAGCTATCAAATCAGATAATGATGCCCTTCAAGCTCAAAACCAAAAACTTCAGGCAGAGATATTGGCACTGAAAAGTAGAGAAGTGCCAAATGAATCTATCAACCTCAACAAGGAAACAGAAGGATCTTGCAGCAATAGAAGTGAGAATAGCTCAGACATCAAGTTGGATATCTCAAGAACACCTGCTATAGACAGTCCTCTATCCTCTCATCAAATTACAAGCAGACCCCTATTCCCATCAACATCTTCTGCCAGGCCTTCTTCAGGAGTGGCTCAGCTTTTCCAAACCTCCTCAAGACCAGACCTTCAATGCCCGAAGATTGATCCGATGGTAAAAGATGAGGGCTTGAGCAGCATGTTTTGTGGGATTGATGATCAAACAGGGTTCTGGCCGTGGTTGGAGCAGCAACATTTCAATTGA 852 0.439 MMAFFPANFILQNHHQEDHHQPPPSLNSILPQDYHGGASFLGKRSMTFSGIELGGEEANNGDEDLSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKSDNDALQAQNQKLQAEILALKSREVPNESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSSHQITSRPLFPSTSSARPSSGVAQLFQTSSRPDLQCPKIDPMVKDEGLSSMFCGIDDQTGFWPWLEQQHFN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1358 283 Pfam Homeobox associated leucine zipper 130 170 IPR003106 GO:0006355|GO:0043565
Dere13g1358 283 SMART HOX_1 73 134 IPR001356 GO:0003677
Dere13g1358 283 Coils Coil 122 170 - -
Dere13g1358 283 PRINTS Lambda-repressor HTH signature 110 126 IPR000047 GO:0003677
Dere13g1358 283 PRINTS Lambda-repressor HTH signature 101 110 IPR000047 GO:0003677
Dere13g1358 283 MobiDBLite consensus disorder prediction 53 76 - -
Dere13g1358 283 CDD homeodomain 75 131 IPR001356 GO:0003677
Dere13g1358 283 ProSiteProfiles 'Homeobox' domain profile. 70 130 IPR001356 GO:0003677
Dere13g1358 283 MobiDBLite consensus disorder prediction 176 246 - -
Dere13g1358 283 ProSitePatterns 'Homeobox' domain signature. 105 128 IPR017970 GO:0000981|GO:0006355
Dere13g1358 283 MobiDBLite consensus disorder prediction 176 249 - -
Dere13g1358 283 SUPERFAMILY Homeodomain-like 66 132 IPR009057 -
Dere13g1358 283 FunFam Homeobox-leucine zipper protein ATHB-13 67 134 - -
Dere13g1358 283 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 214 IPR045224 GO:0003700
Dere13g1358 283 Gene3D - 67 136 - -
Dere13g1358 283 Pfam Homeodomain 75 128 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1358 Dere-ChrDere13 18646737 18647974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1358 2 283 Homeobox Transcription Factor Family AT1G69780 61.486 2.16e-113 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere13g1358 Homeodomain 2.7e-15 CL0123