Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1357 ATGAGGAAGCTGAAGCAGCAGCAGCAGTTGGGTAAGGAAGAAGAATCTCAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAAGATAATATATTGAGAAAGCAGATAAGCATCCATGGAACTGACAATTGGGCAATTATTGCGTCGAACTTCAAGGACAAAACGACAAGACAATGCAGAAGGAGATGGTACACTTACTTGAACTCTGATTTCAAGAAAGGAGGATGGTCACCGGAGGAAGACTTGCTCTTATGTGAGGCTCAAAAAATATTTGGTAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACCGATAACGCTGTGAAAAACCGTTTCTCCACACTGTGCAAGAAGAGAGCAAAATTTGAAGCCTTGGCAAAAGAGAATAACACTTCGTGCACCAATTCGGATAACAAAAGGATTATTTTCCAACATGATGATAACACAAAGTCAGCATCAGAGGCTGCACCACCTGCTAAGAAGATGAGGAGAGCCCATATCCCACATGCTGCAGAAAAGATCAACTTTGGAGACAGATCCCATAAGCAATGTGGAACACCAATAAATCAGCAACCAAGAGCGCCATTTTCAATGTTGGCTCAAAACATGCCAGACCAGCTTGAAGCCTCCAATGCCAAGTTCAGCAGAAATGCCCAGAATTGCAAGACTCAAGAAACATTTCTTAAAGAGGATGATCCAAAGATAAGCGTGTTGATGCAACAAGCAGAGTTATTAAGTTCACTAGCCCTGAAAGTTAATACAGATGATGTGAACCAGAGTCTTGAAGACGCATGGAAGGTGCTTCAAGAGTTTCTGAACCGAACCAAAGAATCAGATATTCTCAAATATAAGATTCCAGATTTACAGCTTGTAGATCTTAAAGATATGATGGAGGACATAAAGAGTAGTAATGAGGGAAGCCAGCAATGTTGGAGGCAACCGGAACTGTATGAAGACTCTCCAAGCAGTTCAGAATACAGTACAGGATCAACTCTCCTGCCCCATTCAGCAGGTGATAATTTGGAACACCCACTGCTTCAGGATATTGGAACTGAACTAAATTCTGTCCAGCTTGGAGATCAAAAAGTAGTTGGTGAATGTGGAAAGGAGATTCTATCTGCTGCAACTGTGGATCAAGATATCTTGCCGTCTTATGAGGAACAGATAAGTAATGACGGCATTGTTTCTGCCTCATCAAGCACAGAGTTCAGTTCCCCTCTTCAAGTTACCCCTCTGTTCAGATCTTTGGCAGCAGGAATTCCTAGCCCACAATTTTCTGAAAGTGAAAGGAACTTCCTAATGAAAACGCTTGGAATGGAGTCCCCATCCATGAACATTAGTGCCAACCCTTCACAACCACCACCCTGCAAAAGAGCCCTACTACACAGTCTATAA 1407 0.4279 MRKLKQQQQLGKEEESQKKERHIVTWTQEEDNILRKQISIHGTDNWAIIASNFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDLLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKFEALAKENNTSCTNSDNKRIIFQHDDNTKSASEAAPPAKKMRRAHIPHAAEKINFGDRSHKQCGTPINQQPRAPFSMLAQNMPDQLEASNAKFSRNAQNCKTQETFLKEDDPKISVLMQQAELLSSLALKVNTDDVNQSLEDAWKVLQEFLNRTKESDILKYKIPDLQLVDLKDMMEDIKSSNEGSQQCWRQPELYEDSPSSSEYSTGSTLLPHSAGDNLEHPLLQDIGTELNSVQLGDQKVVGECGKEILSAATVDQDILPSYEEQISNDGIVSASSSTEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSMNISANPSQPPPCKRALLHSL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1357 468 CDD SANT 78 119 IPR001005 -
Dere13g1357 468 Gene3D - 77 154 - -
Dere13g1357 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 73 IPR017930 -
Dere13g1357 468 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Dere13g1357 468 SMART sant 22 71 IPR001005 -
Dere13g1357 468 SMART sant 74 122 IPR001005 -
Dere13g1357 468 MobiDBLite consensus disorder prediction 307 335 - -
Dere13g1357 468 CDD SANT 25 69 IPR001005 -
Dere13g1357 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Dere13g1357 468 Gene3D - 15 74 - -
Dere13g1357 468 FunFam Transcription factor MYB124 18 74 - -
Dere13g1357 468 MobiDBLite consensus disorder prediction 1 21 - -
Dere13g1357 468 Pfam Myb-like DNA-binding domain 26 85 - -
Dere13g1357 468 SUPERFAMILY Homeodomain-like 22 116 IPR009057 -
Dere13g1357 468 ProSiteProfiles Myb-like domain profile. 26 69 IPR001005 -
Dere13g1357 468 PANTHER MYB PROTEIN-RELATED 25 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1357 Dere-ChrDere13 18603868 18608508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1357 64 468 MYB Transcription Factor Family AT1G14350 54.634 2.09e-140 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere13g1357 Myb_DNA-bind_6 1.4e-14 CL0123