Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1354 ATGGGTAACTGCCTAGATTCTTCTGCCAAAGTAGATACAGCTCAAAGTTCCCGAACCACTTCTGCATCTGGAATTTCAAAAACTAGTCCTTCATCTGCCCCTTCCAGCTTATCACTTCCATCGTTCAGTGAAAAAAGCAATGCCTCTAGTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCTCCAAATCTTAAGCCCTTGACATTCAATGAGCTAAAGAATGCCACCAGAAATTTTCGTCCTGATAGTCTTCTTGGTGAAGGGGGATTTGGTTATGTTTATAAGGGATGGATTGATGAACATACATTCCAAGCTTCAAAACCTGGAACAGGAATGGTTGTTGCTGTGAAAAGGCTAAAACCTGAAGGCTTTCAAGGGCATAAGGAGTGGTTGACTGAAGTTAACTATCTTGGGCAACTTCACCATCCTAATCTGGTTAAATTAATTGGGTACTGCTTGGAGGGAGAGAACCGGCTATTGGTCTATGAGTTTATGCCCAAAGGGAGCTTAGAGAATCATCTGTTTAGAAGGGGGCCTCAGCCACTGTCTTGGTCGGTGAGGATGAAAGTGGCCATTGGGGCTGCCAGAGGGCTCTCTTTCCTCCATAATGCCAAATCACAAGTCATATACCGTGATTTTAAGGCTTCTAATATCCTATTAGATGCTGAGTTCAATGCTAAGCTCTCTGATTTTGGCTTAGCTAAGGCAGGTCCTACTGGTGATAGAACTCATGTGTCTACTCAAGTTATGGGCACTCATGGATATGCAGCTCCTGAATATGTTGCTACAGGTCGATTGACAGCCAAAAGTGATGTCTATAGCTTTGGGGTTGTGTTGCTTGAACTTCTATCTGGAAGACGTGCTGTTGATAAATCAAAAGCTGGTGTAGAGCAGAATCTGGTAGATTGGGCAAAACCATATTTGGGTGACAAACGAAGACTATTTCGGATTATGGACACCAAGTTGGAGGGCCAATACCCTCAGAAAGGAGCCTTCACGGCTGCAACTCTTGCTCTACAATGCCTGAATAGTGAAGCCAAGGCAAGGCCTCCAATGATAGAGGTTTTAGCAACTCTCGAACAGATTGAAGGCCCCAAGAATGCTGGTCGACACTCCCACTCAGAACAACAGAGAGCCACCGTTCCTATAAGAACCTCTCCAGCACGAAACAGGTCCCCACTACATTTGACGCCAACTGCATCCCCATTGCCTTCTCATCGGCAATCTGCTCGTGTACACTGA 1248 0.4527 MGNCLDSSAKVDTAQSSRTTSASGISKTSPSSAPSSLSLPSFSEKSNASSLPTPRSEGEILSSPNLKPLTFNELKNATRNFRPDSLLGEGGFGYVYKGWIDEHTFQASKPGTGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKSKAGVEQNLVDWAKPYLGDKRRLFRIMDTKLEGQYPQKGAFTAATLALQCLNSEAKARPPMIEVLATLEQIEGPKNAGRHSHSEQQRATVPIRTSPARNRSPLHLTPTASPLPSHRQSARVH 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1354 415 CDD STKc_IRAK 87 364 - -
Dere13g1354 415 SUPERFAMILY Protein kinase-like (PK-like) 53 361 IPR011009 -
Dere13g1354 415 PANTHER OS01G0588500 PROTEIN-RELATED 39 365 - -
Dere13g1354 415 ProSiteProfiles Protein kinase domain profile. 81 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1354 415 Gene3D Transferase(Phosphotransferase) domain 1 167 388 - -
Dere13g1354 415 FunFam Probable serine/threonine-protein kinase PBL8 167 381 - -
Dere13g1354 415 Pfam Protein tyrosine and serine/threonine kinase 85 360 IPR001245 GO:0004672|GO:0006468
Dere13g1354 415 MobiDBLite consensus disorder prediction 376 408 - -
Dere13g1354 415 MobiDBLite consensus disorder prediction 1 64 - -
Dere13g1354 415 FunFam Serine/threonine-protein kinase BIK1 48 166 - -
Dere13g1354 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Dere13g1354 415 Gene3D Phosphorylase Kinase; domain 1 57 166 - -
Dere13g1354 415 ProSitePatterns Protein kinases ATP-binding region signature. 87 119 IPR017441 GO:0005524
Dere13g1354 415 MobiDBLite consensus disorder prediction 368 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1354 Dere-ChrDere13 18587094 18590554 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1354 57 361 Glycoside Hydrolase AT3G07070 53.247 3.07e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere13g1354 PK_Tyr_Ser-Thr 8.7e-47 CL0016