Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere13g1353 | ATGGGAGTTTGTATGAGCAGGAGTGCTCTGGATCCTAACCAACCAGCCAATGATATAGCTCAACCTCCTATTGGTGCAAGGATACATGCGAGAGAGGAAAGATCATGTTTTCTGAATGAACAGAGGAATCCGTTTGTTGTTTCTAACCGTAACAGAGGAAAGGGCAACAGAGATGAAAAGCAGAGATGCATAGCTGATCCAAGGGATTTGAATGTTCTGAAAGTGGAGAAGGGTATACGGTTCCAAACTCGTAAGCTCAAAAGCTTCGGCTATAAAGTCTTAGAAAATGCCACCCGCAGGTTCAGCAATAAGAACTTAATCGGGCAGGGAGGTTTTGGTGATGTTTACAAGGGATATCTCACGCACTACACCTTGAATGCTGCTAAACCAAATGAAGGATTTCCCATAGCTGTTAAGAGAATAAGGAGGCTAGGAGCACGAGGCCATGAAGAATGGCTGAATGAAGTGCTATATCTGAGCAAATTTAACCATCCCAACGTGGTGAAGCTCATAGGGTATTGCCGTGAGGGTGAGCATAGGATGCTGGTGTATGAGTACATGAGTGGAGGAAGCTTGGAGGACCATCTCTCGAAAGAAGACAGAGGAAAGCTGAACTGGAATAGGAGAATTAATATAGCACTTGGAGCAGCAAGGAGTTTAGAATATCTTCACTCCTTTGAAACACCAGTAATTCATCGTGACGTTAAATCTTCCAATATCCTGCTGGATGCTAAATTCAATGCAAAGCTCTCAGACTTCGGACTGGCTAGAGATGGACCTGAAGATGACCAGTCCCACGTATCCACAAGAATCCTTGGCACTAGAGGTTATTTTGCTCCGGAGTATATTGCCACAGGGCATTTAACTCTGAAAGCAGATGTATACAGCTTCGGAGTGGTTCTGCTAGAGATATTGTCAGGCTCTGGTCCAGTTAGGAAATATTCAAATGGGATGATGGGGAATCTTGCCCAATGGGCTGAACCATTTCTAAGCAACGCATTGGAACTTCACCGTGTAATTGACAAGAGACTAGGACGCAATTTTCCAATGGAAGGAGCCTGTGAATTGGCTCAGCTAATACTCAGCTGCCTCAGCTCAAACCCCAACCAGCGCCCAACAACGGCCGAAGTTGTGGCTTCCTTAGAACACATTGAGCTAAACTTAGGATTGCATTATAAGAGATCATATAGCAGAACTAGAACCAGAACCCATACTTTTTCTCACTCTTAA | 1230 | 0.4439 | MGVCMSRSALDPNQPANDIAQPPIGARIHAREERSCFLNEQRNPFVVSNRNRGKGNRDEKQRCIADPRDLNVLKVEKGIRFQTRKLKSFGYKVLENATRRFSNKNLIGQGGFGDVYKGYLTHYTLNAAKPNEGFPIAVKRIRRLGARGHEEWLNEVLYLSKFNHPNVVKLIGYCREGEHRMLVYEYMSGGSLEDHLSKEDRGKLNWNRRINIALGAARSLEYLHSFETPVIHRDVKSSNILLDAKFNAKLSDFGLARDGPEDDQSHVSTRILGTRGYFAPEYIATGHLTLKADVYSFGVVLLEILSGSGPVRKYSNGMMGNLAQWAEPFLSNALELHRVIDKRLGRNFPMEGACELAQLILSCLSSNPNQRPTTAEVVASLEHIELNLGLHYKRSYSRTRTRTHTFSHS | 409 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere13g1353 | 409 | FunFam | Serine/threonine-protein kinase BIK1 | 70 | 186 | - | - | |
| Dere13g1353 | 409 | SUPERFAMILY | Protein kinase-like (PK-like) | 83 | 390 | IPR011009 | - | |
| Dere13g1353 | 409 | Pfam | Protein tyrosine and serine/threonine kinase | 104 | 381 | IPR001245 | GO:0004672|GO:0006468 | |
| Dere13g1353 | 409 | Gene3D | Phosphorylase Kinase; domain 1 | 72 | 186 | - | - | |
| Dere13g1353 | 409 | ProSiteProfiles | Protein kinase domain profile. | 101 | 386 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Dere13g1353 | 409 | ProSitePatterns | Protein kinases ATP-binding region signature. | 107 | 139 | IPR017441 | GO:0005524 | |
| Dere13g1353 | 409 | Gene3D | Transferase(Phosphotransferase) domain 1 | 187 | 399 | - | - | |
| Dere13g1353 | 409 | SMART | serkin_6 | 101 | 386 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Dere13g1353 | 409 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 187 | 391 | - | - | |
| Dere13g1353 | 409 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 230 | 242 | IPR008271 | GO:0004672|GO:0006468 | |
| Dere13g1353 | 409 | CDD | STKc_IRAK | 107 | 384 | - | - | |
| Dere13g1353 | 409 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Dere13g1353 | 409 | PANTHER | OS01G0588500 PROTEIN-RELATED | 81 | 385 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere13g1353 | Dere-ChrDere13 | 18584702 | 18586793 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere13g1353 | 87 | 381 | Glycoside Hydrolase | AT3G07070 | 46.644 | 1.33e-83 | 260 |
Transcription factors information