Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1351 ATGGGAAAGACTCCTGGAAAATGGATCAAGGCCTTACTTTCAGGGAAGAAATCAAAGTCACATTCATCAAAAAAGCGAGATTCTTTTAAACCTTCAAGTAACAAGGACCTGCTGGTGGTGTCTTCTGAGGCATATCTGTCTGATCCAACTGCAGATTCTTTATTGATATCTCAGCCCAGTTCTGGAGCTAATGCTACTAAAGGATCACTTTCTGAAAAGGACTTAGATAATCTTGAGAAAATCAGGCTTAACCAAGCTGCTATAAAAGCTCAGGCTGCTTTTAGAGGCTATCAGGCTCGTCGGGCATTTCAAACACTCAAAGGTGTCATACAGCTGCAAGCCCTTATTCGCGGTCACTTGGTCAGAAGACAAGCAGTTTCCACTTTGTACTGTGTTAAAGGAATAGTTAGATTTCAAGCATTGGCTCGTGGTTACAAGGTTAGGCATTCCAATGTTGGTCTTGCAGTCCATAAAATTTGGAAGGATATTAAATGTTCCAATGCTGTTGGAGTATTAACATCTACCGGGGCAGAAAAGCTGTCAAAAAGTGTCTTTGTTCAAAAGCTTCTGGCTTCATCATCCTCTGTATTTCCTCTATATCTCAACTATGATCCTGGAGAACCAAATGTGGCTTGGGAGTGGCTTGACCGTTGGACAAAGTCACACTTTTGGGCACCTCTTCCAGTTCCTGAATTAAAAACAAAACTTGGCTCAGTGTCTAATAAGAAAAATAGCAACAGTAAAACAGTTGAAAATAATGAGGGCCAAGTTAAAAGAAATGCCTGGAAAATTTCTGGTGTGAAAGTTAATGATGGTTCAATCTCAGATTCTAACAAATACAAACAGCATCCAAAAAAGGTTTCAACTCGTCCATTGCATTTAGATCAGGAAAATCCACAGAAGGAAGTTGAGAAAAGTAATTTGAAAAAAAAGCTCCTGCAGCATGTTTCTAATGGATCTGAGACTGCTAATGGGAAAGGAAAATACTTGGCCAGAAAAATATCTGATCCTACTGTAACTGATGTTTCAGAGCATGGCCCAAGTGTTTCTGCAGAAAAAATTAAAGATTTGGCTTTGGTGAAATCCAGACAGTTTGGTCTTGAGCAAAGCCTTGGACAACAAGCAGAAGATGAACATGATAATCCTATAACTGACTTGCCAGCTAACTTGAAGAATGCTAAAGATGAAGATATTCAAGGAGTCAGTGAGGACTTGAACTGTGGTGACAACAATTGTATCAGCAGTGTGAACCCTAAGAACTGCCAGAGAAGAGCTTCACTGCCTGCTAAGTTTGACAACCAAGATGATGGGGTACAAAAATCTCCAAGACTGCCCAGCTATATGGCCCCTACTGAATCTGCAAAAGCTAGGGTAAAAGGACAAGGCTCCCCAAGGCTTGCTAGTGACTTGGTAGATAAAAATGAAATGACCAGGCGGCATTCACTTTCATCCTCAACTAATGGCAAGTTAGGTTCATTTTCTCCACGAGCAGAAAGACTGGTAGCCATGAGCAGCAAAGGAATAATTAGGACTGATAGATCTCTGTCTTCTTCAAGGGATGGGACTGACAAGTTGATCCAACCTAAGTGGAGAAGGTGA 1599 0.4096 MGKTPGKWIKALLSGKKSKSHSSKKRDSFKPSSNKDLLVVSSEAYLSDPTADSLLISQPSSGANATKGSLSEKDLDNLEKIRLNQAAIKAQAAFRGYQARRAFQTLKGVIQLQALIRGHLVRRQAVSTLYCVKGIVRFQALARGYKVRHSNVGLAVHKIWKDIKCSNAVGVLTSTGAEKLSKSVFVQKLLASSSSVFPLYLNYDPGEPNVAWEWLDRWTKSHFWAPLPVPELKTKLGSVSNKKNSNSKTVENNEGQVKRNAWKISGVKVNDGSISDSNKYKQHPKKVSTRPLHLDQENPQKEVEKSNLKKKLLQHVSNGSETANGKGKYLARKISDPTVTDVSEHGPSVSAEKIKDLALVKSRQFGLEQSLGQQAEDEHDNPITDLPANLKNAKDEDIQGVSEDLNCGDNNCISSVNPKNCQRRASLPAKFDNQDDGVQKSPRLPSYMAPTESAKARVKGQGSPRLASDLVDKNEMTRRHSLSSSTNGKLGSFSPRAERLVAMSSKGIIRTDRSLSSSRDGTDKLIQPKWRR 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1351 532 SMART iq_5 82 104 IPR000048 GO:0005515
Dere13g1351 532 SMART iq_5 105 126 IPR000048 GO:0005515
Dere13g1351 532 SMART iq_5 130 152 IPR000048 GO:0005515
Dere13g1351 532 Pfam Protein of unknown function (DUF4005) 434 508 IPR025064 -
Dere13g1351 532 MobiDBLite consensus disorder prediction 13 34 - -
Dere13g1351 532 MobiDBLite consensus disorder prediction 516 532 - -
Dere13g1351 532 PANTHER IQ-DOMAIN 5-RELATED 1 487 - -
Dere13g1351 532 MobiDBLite consensus disorder prediction 428 532 - -
Dere13g1351 532 ProSiteProfiles IQ motif profile. 107 134 IPR000048 GO:0005515
Dere13g1351 532 MobiDBLite consensus disorder prediction 237 259 - -
Dere13g1351 532 Pfam IQ calmodulin-binding motif 85 104 IPR000048 GO:0005515
Dere13g1351 532 Pfam IQ calmodulin-binding motif 107 124 IPR000048 GO:0005515
Dere13g1351 532 Gene3D - 80 131 - -
Dere13g1351 532 MobiDBLite consensus disorder prediction 237 306 - -
Dere13g1351 532 MobiDBLite consensus disorder prediction 278 306 - -
Dere13g1351 532 ProSiteProfiles IQ motif profile. 83 111 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1351 Dere-ChrDere13 18519193 18523230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1351 1 532 IQD Protein Family AT1G14380 38.462 1.62e-96 302