LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere13g1350	ATGATGCAGCCGAGTCCAGAAGGTGAGCTTCGGAGGAAAGTTTCTCCTTTTACTCGCAGCAGCAACACTGGTGACAGTGGCTATAACCCCCTGAATCAGCGTCAACACTTTGGTTCCTGCTCATTCCAACTTCGATTTCAGAGCTATGTTGACTATGGCCACGCAGGCATCTTCTATTTCTCGGCCAATTCTCTGAATATGAAGAATATTTGGGTTTCTTTCTGTTACTTGCTTTCCGCAATTTTTCTTGCTCTGCTTACTCACATTTCAACTGCAGAGCTTACACCAAGCGAGGGTAGAATTCTATTCCAAGTTCAGAAAATTCTTGAATATCCTCAAGTTCTTCAAGGATGGAACAACTGGACCAACTTCTGCTACCTTCCTCCTTCACCTTCTCTCAAGATTGTCTGCTCTAACAGTCATGTAATAGAGTTAACAATAATTGGAAACAAAACCTCTGCTTCCATGCAAACTCTTTCTGAAAGATTTTCCATGGATTCTTTCTTCACTGTCTTGACAAAGCTTTCAAATTTGAAGGTACTTTCACTTGTGTCCTTGGGTTTGAGGGGTCCTTTACCGGCCAAGATCAACAGGTTCTGGTCGCTTCAAGTTCTGAACTTTAGCTCAAATTTCATATATGGAGAAATCCCATCATCTATCTCTTCCATGAAAAGACTCAGGAATCTGGTTTTGGCTGGTAATTTGCTCAATGGGAGCGTCCCAGATCTTAAAAGACTAGCTTCTCTTCAAGAGCTCAATCTGGGTGACAACAAACTTGGTCCTGAGTTCCCATCATTAGGCAAGAATCTTGTGAGTTCAGTGTTGAGAAACAATTCTCTGAGGTCTAAAATTCCCTCAGAGTTTAACCACTTTGACAAGCTCCAAAAACTTGACATATCTTCCAATGAAGTTTTTGGAAACATCCCATCTTCTCTGTTTTCTCTGCCTTCCATTCAGTACGTGAACTTGGCAGAAAACCAACTAAGTGGTGGCCTCTCAATGAACGATGCTTGTGGTTCCTCTCTGACATTTGTGGATATCTCAGACAACCTTTTGGTGGGAAAATTGCCATCCTGCATTGGGTCAAACTCAAAGTCCTCAAATCGCACAGTTTTATATTCTGGGAATTGCTTGTCCACGAGAGGCTTAAAAGACCAACACCCAGCTTCATATTGCAAGAAAGAGGAAGCTTTAGCTGTTAAGCCTCCAGATAGAAGCCAGAAAAAGGAATCAGGAATGAAATTAGTCTTAACACTTGGTATAATTGGAGGTGTCATAGGAACTACAGTTCTTTTAGCTCTATTCATTCTGTTCATCTTGAGGAAGTCCAGAGCAGAAAGAGCAGTTGATAACCTAGACAGATCTGTCGCTGATAAATTCTCTGTCCATGCATCCCCAAGACCAAATATTGATACAAGACGTGTTCCTCAAACGAGGAGGCTACCTGCAATTGGACTTCAACCATACCGAATCTTCACACTAGAGGAAATTGAGGATGTCACAAACAACTTTGACCCGTCAAGTCTGATAGCAGAAGGATCTGAGGGACAGCTATATAAAGGTTATATCAGAGATGGTTCAGTGGCCCTGGTTAACTGTGTGAAGCTCAAGCAGAAGAAGTTGACCCAAAGCCTCTTGCAGCAGCACATGGAGGAGGTATTACCCAATCTGAGGCATAGGCATTTGGTGAGTGTTCTTGGACACTGCGTCATAACTTCTCAGGACAATCCTCAGACAACAAGCACAGTCTTCGTTGTTTTTGAACACATCTCAAATGGGTCATTGAGGGATCATCTTACAGATTGGAGGAAGAAGGAAATGCTGAAATGGCCACAAAGAATGGCGATCACCATAGGAATTGCGAGAGGGATCCAGTTCTTACACACAGGGGTTGTTCCTGGCATATTTGGCAATGATATAAAGATTGAGAAGATTCTTTTGGATGATAGTCTGAACGCAAAAGTTAGTGGATATAACATTCCATTACCATCTAATCATATTGACAGCACTGATGATAGCGCAGAAAAGGAAGATATCTATCAGTTGGGTGTAATTCTACTTGAAGTTATCACTGGCAAACCAATTTCATCTGTCAAAGAAGTAGAGGAGCTCAAAGATGAGCTAGAGAGAGGTTTATCCGAAGCAGCATCAGTACCAAGGGGAGCAACTGATCCCTCCATCAGAGGAAGTTATGCATATGAATCATTGAGGACCACAGTTCAGATTACAATCAATTGCCTCAGTAAAGTTTCTAGTTTGCGTCCTTCAATAGAAGATATTCTCTGGAATTTGCAGTACTCAATTCAAGTCCAAGAGAACTGGACCAGCAGTGGAAATCTCAGTACAAAATTGTAG	2355	0.4195	MMQPSPEGELRRKVSPFTRSSNTGDSGYNPLNQRQHFGSCSFQLRFQSYVDYGHAGIFYFSANSLNMKNIWVSFCYLLSAIFLALLTHISTAELTPSEGRILFQVQKILEYPQVLQGWNNWTNFCYLPPSPSLKIVCSNSHVIELTIIGNKTSASMQTLSERFSMDSFFTVLTKLSNLKVLSLVSLGLRGPLPAKINRFWSLQVLNFSSNFIYGEIPSSISSMKRLRNLVLAGNLLNGSVPDLKRLASLQELNLGDNKLGPEFPSLGKNLVSSVLRNNSLRSKIPSEFNHFDKLQKLDISSNEVFGNIPSSLFSLPSIQYVNLAENQLSGGLSMNDACGSSLTFVDISDNLLVGKLPSCIGSNSKSSNRTVLYSGNCLSTRGLKDQHPASYCKKEEALAVKPPDRSQKKESGMKLVLTLGIIGGVIGTTVLLALFILFILRKSRAERAVDNLDRSVADKFSVHASPRPNIDTRRVPQTRRLPAIGLQPYRIFTLEEIEDVTNNFDPSSLIAEGSEGQLYKGYIRDGSVALVNCVKLKQKKLTQSLLQQHMEEVLPNLRHRHLVSVLGHCVITSQDNPQTTSTVFVVFEHISNGSLRDHLTDWRKKEMLKWPQRMAITIGIARGIQFLHTGVVPGIFGNDIKIEKILLDDSLNAKVSGYNIPLPSNHIDSTDDSAEKEDIYQLGVILLEVITGKPISSVKEVEELKDELERGLSEAASVPRGATDPSIRGSYAYESLRTTVQITINCLSKVSSLRPSIEDILWNLQYSIQVQENWTSSGNLSTKL	784

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere13g1350	784	Gene3D	Ribonuclease Inhibitor	268	398	IPR032675	-
	Dere13g1350	784	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	160	765	-	-
	Dere13g1350	784	SUPERFAMILY	Protein kinase-like (PK-like)	483	764	IPR011009	-
	Dere13g1350	784	MobiDBLite	consensus disorder prediction	15	30	-	-
	Dere13g1350	784	Gene3D	Phosphorylase Kinase; domain 1	476	576	-	-
	Dere13g1350	784	FunFam	Putative inactive leucine-rich repeat receptor-like protein kinase	590	780	-	-
	Dere13g1350	784	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At2g02780	95	268	-	-
	Dere13g1350	784	SUPERFAMILY	L domain-like	110	379	-	-
	Dere13g1350	784	Coils	Coil	698	718	-	-
	Dere13g1350	784	FunFam	Putative inactive leucine-rich repeat receptor-like protein kinase	270	397	-	-
	Dere13g1350	784	Gene3D	Transferase(Phosphotransferase) domain 1	590	666	-	-
	Dere13g1350	784	Gene3D	Transferase(Phosphotransferase) domain 1	667	779	-	-
	Dere13g1350	784	Pfam	Protein tyrosine and serine/threonine kinase	509	658	IPR001245	GO:0004672\|GO:0006468
	Dere13g1350	784	Gene3D	Ribonuclease Inhibitor	97	267	IPR032675	-
	Dere13g1350	784	MobiDBLite	consensus disorder prediction	1	30	-	-
	Dere13g1350	784	ProSiteProfiles	Protein kinase domain profile.	504	768	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere13g1350	Dere-ChrDere13	18511369	18518427	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere13g1350	90	697	Miscellaneous Gene Families	AT2G02780	49.294	0.0	541

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VI-1	Dere13g1350		PK_Tyr_Ser-Thr	1.5e-11	CL0016