Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1347 ATGCATTTCTTTGACATCCTTCAACAAGATCATCAAGAGGCTATCAAATTAGCTAAAGATAGTCATGAAGAGATTATTAATGAAGAAAGTGAGCTTGTGTCCCTTTCTCTTGGGATGAAGGCTACCAATATGGATGACAAGAAGGTTAAGAATGGCAAAATAGCTGATCAAAAGAGAGAAGATGATGAGAATTTGGATAAGAACATTGAAGGGCTTGAACTTGGGTTAGATGTCAGATTTGAACCGCCTTCATCAGCTTCAGCTGAAGCTAAAAATATTAATCCAAACCCTATAGGTAAGTCTGAAGAACCAGGGAAAGAAGAGGAAGCCAGTGAAATAAGGCTACCCAGTAAAGCTCTGAAGACAATGAAACGTGGGGATAATGATATTGAAGCTTCTCCACAAGCTCAGCTCAAGAAAGCTAGGGTTTCTATCAGAGCCAGATGTGACACTCAAACGATGAATGATGGATGCCAATGGAGAAAATATGGACAGAAAATGGCTAGAGGAAATCCATGTCCCAGGGCGTACTATCGATGCACTCTTTCTCCATCTTGTCCTGTGAGAAAGCAGGTGCAAAGATGTGCAGAGGACATGTCCATCTTGATCACAACCTATGAAGGAACCCACAACCACCCGCTTCCTTTCTCAGCCTCAGCCATGGCTTCCACAACTTCTGCAGCTGCTTCCACACTGCACTCTCCCTCTTTGACCTCAAACACTGATTCTAATAACCTTCATGCCCTAAACTTCTCTAATTCCTCCAAAATTCCAAGACCACACCCATATTTCTGCTTCCCCAGTTCTTCTATTTCAACCTCCCATTCTCACTCCACAATCACACTCGACTTCACTGCACCACCACCACCACCAACTACTTCATCTCATGTTGGAAAGCTTGCTTCCTCAAAAAGCCTCAGTTTTCCCTCAAATTTCTATCCTTTACGGTCTAGCATGCCTCAGTCATCACCACTTTGGAACACCTATGGTGACAATTACTTCAACCATGGGACACTGACCCACATTGGAAACCAAAGTGGTTCCGTATTGAACTCTGGGAAACAACCATTTCAGGGGCATATTGTCCATCAACATAATCATAAACAGCCTTTGTCAGAGACCATTGTTGCAGCTGCAGCAGATAAGACAGTCACATCAAACTCAAAATTTCAATCAGCACTTGCTGCTGTCCTCACAACATACCTTAATAATGGGGTTGGTGGGGTTGGTGGTATGTACACTTCTAGCCCAAATGGCGTAGGCTGTGCATCATCAAGGTACCTGAATAATGTGTCTTCTTCTTCTTCTGCAAATTATGCAGCACGACAAGGAAAGTTGGGCCCGTTTCCAGCTTCATTTGCATCATCACCGGCATCTAAAAGTGCCTCGGCTTCTCTTTCGGATAGAAGTTATCAGCATCTAGAGTATTGGAAATAA 1437 0.4328 MHFFDILQQDHQEAIKLAKDSHEEIINEESELVSLSLGMKATNMDDKKVKNGKIADQKREDDENLDKNIEGLELGLDVRFEPPSSASAEAKNINPNPIGKSEEPGKEEEASEIRLPSKALKTMKRGDNDIEASPQAQLKKARVSIRARCDTQTMNDGCQWRKYGQKMARGNPCPRAYYRCTLSPSCPVRKQVQRCAEDMSILITTYEGTHNHPLPFSASAMASTTSAAASTLHSPSLTSNTDSNNLHALNFSNSSKIPRPHPYFCFPSSSISTSHSHSTITLDFTAPPPPPTTSSHVGKLASSKSLSFPSNFYPLRSSMPQSSPLWNTYGDNYFNHGTLTHIGNQSGSVLNSGKQPFQGHIVHQHNHKQPLSETIVAAAADKTVTSNSKFQSALAAVLTTYLNNGVGGVGGMYTSSPNGVGCASSRYLNNVSSSSSANYAARQGKLGPFPASFASSPASKSASASLSDRSYQHLEYWK 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1347 478 ProSiteProfiles WRKY domain profile. 149 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere13g1347 478 Pfam WRKY DNA -binding domain 155 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Dere13g1347 478 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 416 IPR044810 GO:0003700
Dere13g1347 478 MobiDBLite consensus disorder prediction 84 112 - -
Dere13g1347 478 FunFam probable WRKY transcription factor 31 139 216 - -
Dere13g1347 478 SUPERFAMILY WRKY DNA-binding domain 147 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere13g1347 478 Gene3D WRKY domain 139 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Dere13g1347 478 SMART WRKY_cls 154 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1347 Dere-ChrDere13 18491684 18493821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1347 1 287 WRKY Transcription Factor Family AT5G15130 46.129 1.20e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Dere13g1347 WRKY 5.9e-24 CL0274