Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1346 ATGTTGCAGCTACACTATCTATCTTCTTCCGCGGTCACTACACAGTACACCATTAAGCTCTGCCCTAACCATAGTTTCTCTCCGAAGTCCTTCTCTTTTACCTGCGCTTCCAAGCCCAGTGGCTCTAGCTTCCAGGTTACCCTACCATCCTCCCGCAGAAACACGCTTTCTATAAAAAGCCGTCAATCCGAGTTCTTCGACCAGCAAAGCTTAACCAGACCCACAAGAAATGCAAACGGGAGTGATGCAGCTGGAGCTCTGCCGCCTAGGGTTTATGTAGGTCACTCGATTTACAAAGGGAAGGCTGCGCTTACGGTGACTCCTAGGCCTCCAGAGTTTGCGTCATTGGATTCAGGGGCATTCAAAGTATCTCGGGAAGGTTATGTGCTACTTCAGTTCGCTCCTGCAGTTGCTATGCGACAATATGACTGGAACAGAAAGCAGGTATTCTCTCTGTCAGTGGGTGAAATGGGAAGTCTAATCAGCCTTGGGGCAAGGGAGTCTTGTGAATTTTTCCATGATCCTTTTAAGGGGAAAAGTGATGAAGGTAAAATCAGAAAAGTTTTGAAGGTGGAGCCACTTCCAGATGGTTCTGGTCACTTTTTTAACCTAAGTGTTCAAAACAAGATTGAAAACGTGGATGAAAGCATCTATATCCCTGTTACAAAAGCAGAGCTATCAGTTTTCACCTCAATTTTCAATTTTATCATGCCATACCTTCTAGGTTGGCATGCATTTGCAAATTCTATAAAGCCAGAGGATCAAAGCCGAGTGAATAACGCCAACGCAAGATATGGAGGAGACTATGAATGGAGCAGATAG 822 0.4526 MLQLHYLSSSAVTTQYTIKLCPNHSFSPKSFSFTCASKPSGSSFQVTLPSSRRNTLSIKSRQSEFFDQQSLTRPTRNANGSDAAGALPPRVYVGHSIYKGKAALTVTPRPPEFASLDSGAFKVSREGYVLLQFAPAVAMRQYDWNRKQVFSLSVGEMGSLISLGARESCEFFHDPFKGKSDEGKIRKVLKVEPLPDGSGHFFNLSVQNKIENVDESIYIPVTKAELSVFTSIFNFIMPYLLGWHAFANSIKPEDQSRVNNANARYGGDYEWSR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1346 273 Pfam Whirly transcription factor 97 231 IPR013742 GO:0003697|GO:0006355|GO:0006952
Dere13g1346 273 SUPERFAMILY ssDNA-binding transcriptional regulator domain 89 273 IPR009044 GO:0003677|GO:0006355
Dere13g1346 273 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 82 257 - -
Dere13g1346 273 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 45 273 IPR013742 GO:0003697|GO:0006355|GO:0006952
Dere13g1346 273 Gene3D Transcriptional Coactivator Pc4; Chain A 83 262 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1346 Dere-ChrDere13 18481021 18483860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1346 56 273 Whirly Transcription Factor Family AT1G14410 71.101 8.86e-119 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Dere13g1346 Whirly 5.6e-61 CL0609