Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1345 ATGATTTCCTATGAAATTTACTCCTTCTGTACTCCATTTCGCATACTAAGGGTCGCTCCATGGAGACGAACGAACACCCAGTTGTTGATTTTTCTGCCTTCCAAGCGGAAGATAAGCTTCTTACCCCGCACCGCTTGTTCGTCTGTTAGCGACGAATCTTTTTCGTTGCCAAAACGAGGACAGTTGGGTTATAGTCCTCCCGAGGAACTGTACGGTCTGGAGGTGGAACTCAAGCCAAGGAAAGGTGGCTCTCAAGCATCGGAGCCAAAGTCGTGGTTTGGTCCAAATGGACAGTACATAAGAGAGTTACCTTGTCCAAGCTGCCGGGGAAGAGGTTATACTCCTTGTACGGAGTGTGGAATTGAAAGATCAAGATCAGACTGTCCAAAGTGTAGTGGGAAGGGTATAGTTACTTGCCACCAGTGCTCAGGAGATCGTGTTACTTGGGAAGAATCAATTGATGAGCAGCCATGGGAAAGAGCTCGTTCTATTTCCCCACTTAAGGTGCAGGAAGATGACGAAGTTGACAATTTAGACATAGAGCTGGATATGAAGAAAAAATCAAAACGTGTTTACCAGTCACCATCTCCTGAAGTTGGACTGAAAATAAGTCGCTCATTAAAAAGTCTCAATGAGAAAACCGGTCTGTTTAGTAAGAGAATGAAGATTATCCATCGTGATCCCACACTTCATGCACAGAGAGTGGCTGCAATTAAGAAATCCAAGGGAACTGTTGCAGCAAGAAAGCATACCTCTGAAACTATGAAGGCTTTCTTTAGTAATCCAGAAAATCGCCAAAAAAGGAGCATTGCCATGAAAGGAGTGAATTTCTTCTGCCAAAACTGTGGACGGGAAGGGCATAGGAGACACTACTGTCCAGAGCTCAAGGATAATTTGATCATTCGGCAATTCACGTGCCGGCTATGTGGGGAGAAAGGCCATAACAGAAGAACATGCAACAAGTTAAGGATAAGCCAACGAAACGGAAGACTTGTAAAACATTATCGTTGTAAAATATGTCGTCAATATGGCCATAATCGCAGGACATGCCCTCGAGTAGTTGATACCACCAAAACAAGAAAGGACATGGCTTCTCGAAGACCATACAAGTGTCGCTTGTGCCACAAGAAGGGACACAATGTTAGGACCTGTCCTAGGAAAACAGTTATCACAGAGCATCCTCAAGACTAA 1191 0.4442 MISYEIYSFCTPFRILRVAPWRRTNTQLLIFLPSKRKISFLPRTACSSVSDESFSLPKRGQLGYSPPEELYGLEVELKPRKGGSQASEPKSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPKCSGKGIVTCHQCSGDRVTWEESIDEQPWERARSISPLKVQEDDEVDNLDIELDMKKKSKRVYQSPSPEVGLKISRSLKSLNEKTGLFSKRMKIIHRDPTLHAQRVAAIKKSKGTVAARKHTSETMKAFFSNPENRQKRSIAMKGVNFFCQNCGREGHRRHYCPELKDNLIIRQFTCRLCGEKGHNRRTCNKLRISQRNGRLVKHYRCKICRQYGHNRRTCPRVVDTTKTRKDMASRRPYKCRLCHKKGHNVRTCPRKTVITEHPQD 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1345 396 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 102 150 IPR036410 -
Dere13g1345 396 SUPERFAMILY Retrovirus zinc finger-like domains 276 322 IPR036875 GO:0003676|GO:0008270
Dere13g1345 396 SUPERFAMILY Retrovirus zinc finger-like domains 324 356 IPR036875 GO:0003676|GO:0008270
Dere13g1345 396 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 41 320 - -
Dere13g1345 396 SMART c2hcfinal6 336 352 IPR001878 GO:0003676|GO:0008270
Dere13g1345 396 SMART c2hcfinal6 305 321 IPR001878 GO:0003676|GO:0008270
Dere13g1345 396 SMART c2hcfinal6 370 386 IPR001878 GO:0003676|GO:0008270
Dere13g1345 396 SMART c2hcfinal6 278 294 IPR001878 GO:0003676|GO:0008270
Dere13g1345 396 ProSiteProfiles Zinc finger CCHC-type profile. 279 294 IPR001878 GO:0003676|GO:0008270
Dere13g1345 396 Gene3D - 274 322 - -
Dere13g1345 396 Gene3D - 329 394 - -
Dere13g1345 396 Pfam Zinc knuckle 367 385 IPR025829 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1345 13 389 C2H2 Transcription Factor Family AT5G20220 58.524 3.02e-157 447