Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1343 ATGGAGCTTGCCTCTGTGAAATCTGAACTGAGCCCAGAAAGCCATAGGTCGCTCATGGTGGATGGTAGTGAGAGTAATGCTAGTAAGTGTGGCAAAAGGAGGCGAAGAGATTCATGTATGACCATATTAGAGGGCAATGAACAGCCACAAGAACAGCAGTCACAGGGTGAACAATCAACCACCACTACCACCACCACTGTGAAGAGAAGCTCGAGGTTCCGAGGAGTTAGCAGACATAGGTGGACAGGGAGGTTTGAAGCCCATCTATGGGATAAAGGGACATGGAATCCCACTCAGAAGAAGAAAGGAAAGCAAGGGGCATATACTGATGAAGAAGCAGCTGCTAGAGCTTATGATTTGGCTGCACTAAAGTACTGGGGAACTTCAACTTTCACAAACTTCCCTGTATCTGATTATGAGAAAGAGATTGAGATCATGAAAACTGTAACCAAAGAAGAATACCTTGCTTCGTTGAGAAGGAGAAGCAGTGGTTTTTCTAGAGGTGTATCAAAGTACAGAGGAGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCAAGGATAGGGAGGGTGTTTGGCAACAAGTACCTCTACCTTGGGACTTACAGTACGCAAGAAGAGGCTGCTCGTGCATATGACATTGCTGCAATTGAGTACAGAGGCATAAATGCAGTGACAAATTTTGATTTGAGCACATACATTGGATGGCTAAGACCAGGAGCACCTTCTACTTCTTTGCAAGAGGAAAAACCAAGCGGGGATCCTCAGAACATGACAACATCAAACCTCGTCCAAACAAAAAGAACAACTGATGTATCCTACTTCAACCTCCATCCATTCCCAGCAGGTGACTCAGAAAGTACCAAGAAGAAGCAAAGCATTTCACAATATATGAGCCCTCTAAGTGCTTGCAATAATAAGTCATCATCCCCAACAGCACTAGGGATTCTCCTTAAGTCCTCAGTATTCAGAGAGCTGATGCAGAGGAATCTGAATTCCGCTAATGAAGAAGCTGAAGAAAGTGAATTTAAAATCCCTCAAGAAGGCAACGATGGAGTTGGAGGGGTTTTTGATAATGAAATTGCTAGTACCTCTTTTTTATGCCCTTCCAATGGCAGCAGATTTTGCATGGAGTCACCAGAAGAAAGCACATTCCCACTGTATCATAGAACCGTGCAATCCCTGTGGAATGGTGCTTTAAACTGA 1206 0.442 MELASVKSELSPESHRSLMVDGSESNASKCGKRRRRDSCMTILEGNEQPQEQQSQGEQSTTTTTTTVKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQGAYTDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIGWLRPGAPSTSLQEEKPSGDPQNMTTSNLVQTKRTTDVSYFNLHPFPAGDSESTKKKQSISQYMSPLSACNNKSSSPTALGILLKSSVFRELMQRNLNSANEEAEESEFKIPQEGNDGVGGVFDNEIASTSFLCPSNGSRFCMESPEESTFPLYHRTVQSLWNGALN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1343 401 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 42 298 - -
Dere13g1343 401 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Dere13g1343 401 PRINTS Ethylene responsive element binding protein signature 211 231 IPR001471 GO:0003700|GO:0006355
Dere13g1343 401 ProSiteProfiles AP2/ERF domain profile. 72 135 IPR001471 GO:0003700|GO:0006355
Dere13g1343 401 Pfam AP2 domain 170 221 IPR001471 GO:0003700|GO:0006355
Dere13g1343 401 Pfam AP2 domain 71 127 IPR001471 GO:0003700|GO:0006355
Dere13g1343 401 SMART rav1_2 72 141 IPR001471 GO:0003700|GO:0006355
Dere13g1343 401 SMART rav1_2 171 235 IPR001471 GO:0003700|GO:0006355
Dere13g1343 401 MobiDBLite consensus disorder prediction 1 73 - -
Dere13g1343 401 ProSiteProfiles AP2/ERF domain profile. 171 229 IPR001471 GO:0003700|GO:0006355
Dere13g1343 401 FunFam AP2-like ethylene-responsive transcription factor 170 231 - -
Dere13g1343 401 Coils Coil 324 344 - -
Dere13g1343 401 CDD AP2 170 231 IPR001471 GO:0003700|GO:0006355
Dere13g1343 401 Gene3D AP2/ERF domain 71 137 IPR036955 GO:0003700|GO:0006355
Dere13g1343 401 Gene3D AP2/ERF domain 170 231 IPR036955 GO:0003700|GO:0006355
Dere13g1343 401 MobiDBLite consensus disorder prediction 27 41 - -
Dere13g1343 401 SUPERFAMILY DNA-binding domain 71 137 IPR016177 GO:0003677
Dere13g1343 401 MobiDBLite consensus disorder prediction 43 71 - -
Dere13g1343 401 SUPERFAMILY DNA-binding domain 170 231 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1343 Dere-ChrDere13 18447728 18450331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1343 68 263 AP2-EREBP Transcription Factor Family AT5G57390 58.605 4.19e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Dere13g1343 AP2 1.5e-07 CL0081