Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1342 ATGGAAAAACTAAACAAACCCTTATTTTCTTTCTTCTTGTTCTCTTGGGTAGCTATTCGTACCCTTCATGCAAATGTGTTAGAAACTGAAACTTTTTGGAAAGAAAATGCCAAATCTTTTGATGGGTACTGGCATGAAAGAGAAAAGCAAGCTGAGCAGGCCAACCGTGGTGCCTATAATTCTAATCCCTATGAAGTTGTAGGCAACCTCAGCGTTAGTGTTGAACGAATGCTGCTTGGCCAAACGGCTGAACGAAGGCAATTGAGAGGAAACAGACGGAATGACGGTCCATGCCAGGCCACCAACCCCATTGACAGGTGCTGGAGGTGTGATCCCAACTGGGCTAACAACCGCCAGAAGCTTGCAGATTGTGCGCAAGGCTTTGGGAAAGGCACAACTGGTGGAAAGGGTGGTCCATACTATGTGGTGACAGATCCCTCAGATGATGATATGCTTAACCCCAAAGTAGGTACCCTTCGGCATGCAGTCACAAGGACAGGTCCCTTGTGGATCATCTTTGGACGCAGCATGATGATTAGGCTCAACCAGGAGCTCATTATGACTGGGGATAAGACCATTGATGGCAGAGGTGCTACAGTTGTCATCGCTGGAGGGGCCGGTATCACCATCCAGTTCATAAAAAATGTGATCATTCATAACATTAAGATCTTTAACATAGTGACTGGCAGTGGTGGAATGATTAGAGATAGTGAGACCCATTTTGGTTTTAGGACAATGAGCGATGGTGATGGGATTTCAATCTTTGGCTCCAGCAACGTCTGGATTGACCATGTTTCCATGAGCAATTGCCAAGATGGACTCATAGATGCCATTATGGGATCCACAGCTATTACCATCTCCAACAGCCATTTCACAAAACATAATGAGGTGATGTTGTTTGGGGCCAGTGACAGCTATGCCGGGGATCAGATTATGCAAATCACAGTGGCATTCAACCACTATGGACAGGGATTAATCCAAAGGATGCCAAGGTGCAGGTGGGGCTTTGTCCATGTGGTTAACAATGACTACACCCATTGGGAGATGTATGCCATTGGTGGCAGCAAGCATCCTACCATTATCAGCGAGGGCAACAGATTCATAGCCCCAAATAACATATTTAGCAAAGAGGTGACAAAGAGAGAATACTCACCAGAGAATGTGTGGTCGTCATGGCAATGGAGATCAATAAATGACCTATACATGAACGGAGCATTCTTCAGGGAATCTGGGACGGATCTTCCAGTGTCAACGCGTGACAAGCTCAGGGCCAAGCCTGGAACATATGTGACGAGACTCACACGCTATGCCGGAATGCTAAACTGCCAAGTTGGTAAGCCTTGTTAA 1347 0.4625 MEKLNKPLFSFFLFSWVAIRTLHANVLETETFWKENAKSFDGYWHEREKQAEQANRGAYNSNPYEVVGNLSVSVERMLLGQTAERRQLRGNRRNDGPCQATNPIDRCWRCDPNWANNRQKLADCAQGFGKGTTGGKGGPYYVVTDPSDDDMLNPKVGTLRHAVTRTGPLWIIFGRSMMIRLNQELIMTGDKTIDGRGATVVIAGGAGITIQFIKNVIIHNIKIFNIVTGSGGMIRDSETHFGFRTMSDGDGISIFGSSNVWIDHVSMSNCQDGLIDAIMGSTAITISNSHFTKHNEVMLFGASDSYAGDQIMQITVAFNHYGQGLIQRMPRCRWGFVHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIAPNNIFSKEVTKREYSPENVWSSWQWRSINDLYMNGAFFRESGTDLPVSTRDKLRAKPGTYVTRLTRYAGMLNCQVGKPC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1342 448 SMART amb_all 176 373 IPR002022 -
Dere13g1342 448 Pfam Pectate lyase 190 367 IPR002022 -
Dere13g1342 448 Pfam Pectate lyase, N terminus 39 88 IPR007524 GO:0030570
Dere13g1342 448 PANTHER PECTATE LYASE 18-RELATED 53 446 IPR045032 GO:0030570
Dere13g1342 448 Gene3D - 101 441 IPR012334 -
Dere13g1342 448 SUPERFAMILY Pectin lyase-like 102 439 IPR011050 -
Dere13g1342 448 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Dere13g1342 448 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Dere13g1342 448 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Dere13g1342 448 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Dere13g1342 448 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Dere13g1342 448 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Dere13g1342 448 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1342 Dere-ChrDere13 18441026 18442851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1342 36 448 Polysaccharide Lyase AT1G14420 58.372 0.0 523