Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1337 ATGGGGTTGGGTGCTGATAATGGTAAGGTAGAGTCTTGGGATGTCAGCAAATCAAAGGGGAGGAAGAAGAAGAAAAAAGATGATGGGGTTGTGGAAGAGGAAGAGACTGGGTGTTGGGTTAGGCTGAGGTTCATTGGCAGCTGCATTTCTTCGAGATCCAAGGTTGATAGCTCAGTTAGCGGCACCAGCACTCATTACGCTGAAAGTAAATCAATTAATGATACAAGTAGAGATCAACCAGCAGCTCCAGTAGTCTCTTCTACGACCACTAGTAATGCTGAAAGTAATTCATCCACCTCCAAACTTGAAGAGGAGCTTAAAGTTGCTTCCAGGCTGCGAAAGTTCTCGTTTAATGATCTTAAGTTGGCAACAAGAAACTTTCGGCCTGAGAGTCTTCTAGGTGAAGGTGGCTTTGGTTGTGTATTCAAGGGATGGATTGAAGAAAATGGAACTGCTCCAGTGAAGCCTGGCATGGGGCTTACAGTTGCTGTAAAAACCCTCAATCATGATGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAAGTTAGCTTTCTTGGTGATCTAATTCACCCGAACCTTGTTAAACTTATAGGCTACTGTATTGAAGATGATCAAAGGTTGCTAGTGTATGAGTTCATGCCTCGGGGAAGCCTGGAAAACCACCTATTTAGGAGATCCCTGCCACTTCCGTGGTCCATTAGAATGAAAATTGCACTAGGAGCTGCAAAGGGTTTGGCTTTTCTTCACGAGGAAGCTGAAAGGCCAGTAATATATAGGGATTTTAAAACTTCCAATATACTATTAGATGCTGACTACAATGCCAAGCTTTCAGATTTTGGACTTGCCAAAGATGGTCCAGAGGGTGATAAAACCCACGTGTCTACTCGGGTGATGGGAACCTATGGTTATGCAGCACCAGAGTATGTCATGACAGGACATCTTACATCAAGAAGTGATGTGTACAGCTTCGGAGTGGTGCTACTTGAGATGTTGACCGGCAGAAGATCAATGGACAAAAACCGACCCAATGGTGAACATAACCTTGTTGAATGGGCTCGCCCACATCTAGGGGAGAGAAGAAGGTTCTACAGGTTAATTGATCCTCGGCTAGAAGGTCACTTTTCTATAAAAGGAGCTCAAAAAGCTGCCCAACTGGCTGCTCACTGCCTTAGTAGAGATCCAAAAGCCAGACCCCTAATGAGTGAAGTCGTAGAAGCTTTAAAGCCTCTGCCAAACCTTAAGGACATGGCAAGCTCATCATATTATTTTCAGACTATGCAAGCTGACCGTTTTGGAGCCAGCCCTAATACCCGAAACGGGCGAACACAAGGAGGATTGCTTACCCGGAATGGGCAGCAGCAGAGGAGCCTTTCAATACCTCATGGTTCTCATGCATCTCCTTATCACTATCAGTATCCCCAACAATCACCAAAACCCAATGGCAAAGCATAG 1452 0.4525 MGLGADNGKVESWDVSKSKGRKKKKKDDGVVEEEETGCWVRLRFIGSCISSRSKVDSSVSGTSTHYAESKSINDTSRDQPAAPVVSSTTTSNAESNSSTSKLEEELKVASRLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGMGLTVAVKTLNHDGLQGHKEWLAEVSFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAQLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFGASPNTRNGRTQGGLLTRNGQQQRSLSIPHGSHASPYHYQYPQQSPKPNGKA 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1337 483 MobiDBLite consensus disorder prediction 53 99 - -
Dere13g1337 483 Gene3D Transferase(Phosphotransferase) domain 1 213 428 - -
Dere13g1337 483 MobiDBLite consensus disorder prediction 53 102 - -
Dere13g1337 483 Pfam Protein tyrosine and serine/threonine kinase 131 407 IPR001245 GO:0004672|GO:0006468
Dere13g1337 483 MobiDBLite consensus disorder prediction 432 483 - -
Dere13g1337 483 ProSitePatterns Protein kinases ATP-binding region signature. 133 165 IPR017441 GO:0005524
Dere13g1337 483 ProSiteProfiles Protein kinase domain profile. 127 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1337 483 MobiDBLite consensus disorder prediction 468 483 - -
Dere13g1337 483 Gene3D Phosphorylase Kinase; domain 1 86 212 - -
Dere13g1337 483 FunFam Probable serine/threonine-protein kinase PBL8 213 428 - -
Dere13g1337 483 SUPERFAMILY Protein kinase-like (PK-like) 113 427 IPR011009 -
Dere13g1337 483 MobiDBLite consensus disorder prediction 432 461 - -
Dere13g1337 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Dere13g1337 483 FunFam Serine/threonine-protein kinase BIK1 94 212 - -
Dere13g1337 483 PANTHER OS01G0588500 PROTEIN-RELATED 91 410 - -
Dere13g1337 483 CDD STKc_IRAK 133 410 - -
Dere13g1337 483 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1337 Dere-ChrDere13 18376967 18381511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1337 74 407 Glycoside Hydrolase AT3G07070 53.550 2.32e-117 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere13g1337 PK_Tyr_Ser-Thr 1.2e-45 CL0016