Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere13g1334 | ATGGAATCACAGTTGAGTCTGATAGACCAATCATTCAGTAGCCGTTACTCCTACTATGTTAGCGAGGCGCTCGACGAATTGCCTGACAATTTTATCATTACCGACCCTTCTATCCCTGGCCATCCAATTGTTTTTGCAAGCCTTGGGTTCTTGAAAATGTCAGGTTATTCCAGAGACGAGGTGATTGGGAAGAATGGTAGAATTTTTCAAGGACCAGGGACTTGTAGAAGATCGGTAATAGAAATTCGAGAGGCAATAAGAGAAGAGAGAGCCATTCAGATCAATTTATTGAATTATCGTAAAGATGGGAGACCCTTTTGGATGTTGTTTCACATGAGCCCTGTATTTAACGAGTATGATGGCAGGGTGAGTCACTTCGTGGCAGTTCAGGTACCTCTTTCGAGGAAACGGAGGCGGTCGGGATGTGGGTTTAGGACAAATGATGTTAATTTGAGTGAGGATGGGTCTAAGGCTCAGGATTTTGTATATGGATCATGTCGGAAGGAAGTGTGCGCGGATTCTTTGCTGGAACTTGGTCGTGTTTTGTCCCTTCATCAAGTGTTAGAACATGATTTTAGAGATGGTGAAGTGCCGTGTGAGGCAAGTGATGTTGAGAAGAGAAGAGCCGTGACTGCCATGGACAACATTTTTTCTGTGCTAACCCACTATAGCGAGTTAACTGGCAGATTGGTATGTAGAAAGAGATGCAGCATTTCTGACGCGGATCTTCTCGGCTCATCCTTGATTATATCCCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCTCACTTACCTGACATGCCTATTGTGTACGCCAGCGACGCCTTCTTGAAATTGACAGGCTACGTAAGAGATGAAGTGTTGGGACGCAATTGTAGATTTCTGAGTGGACTAAATACTGATACCTCAACTTTATATATGATAAGAGAAAGCATTAAATCTGAACAACCATGCACAGTCAGTATTTTGAATTACAGGAAGGATGAAAGCTCATTTTGGAATTTTCTACATATATCACCTGTCCGCGATGCCTCTGGCAAGATAGCATACTTTGTGGGAGTTCAAATGGAAGAAGGCTGCAAGAACAAGCAGGAGAGACAGGGTTTTAGCCCTGAGATGAGGCAGCTTAGCGTGGTTGGTGCAGTCAAGGTTGCTGTGAGGAGTTCATCATTGACTGCTGGATCATCAAAATCATATACAGGATAA | 1212 | 0.4315 | MESQLSLIDQSFSSRYSYYVSEALDELPDNFIITDPSIPGHPIVFASLGFLKMSGYSRDEVIGKNGRIFQGPGTCRRSVIEIREAIREERAIQINLLNYRKDGRPFWMLFHMSPVFNEYDGRVSHFVAVQVPLSRKRRRSGCGFRTNDVNLSEDGSKAQDFVYGSCRKEVCADSLLELGRVLSLHQVLEHDFRDGEVPCEASDVEKRRAVTAMDNIFSVLTHYSELTGRLVCRKRCSISDADLLGSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYVRDEVLGRNCRFLSGLNTDTSTLYMIRESIKSEQPCTVSILNYRKDESSFWNFLHISPVRDASGKIAYFVGVQMEEGCKNKQERQGFSPEMRQLSVVGAVKVAVRSSSLTAGSSKSYTG | 403 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere13g1334 | 403 | ProSiteProfiles | PAS repeat profile. | 271 | 293 | IPR000014 | - | |
| Dere13g1334 | 403 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 28 | 130 | IPR035965 | - | |
| Dere13g1334 | 403 | SMART | pac_2 | 321 | 360 | IPR001610 | - | |
| Dere13g1334 | 403 | SMART | pac_2 | 93 | 136 | IPR001610 | - | |
| Dere13g1334 | 403 | SMART | pas_2 | 246 | 319 | IPR000014 | - | |
| Dere13g1334 | 403 | SMART | pas_2 | 18 | 87 | IPR000014 | - | |
| Dere13g1334 | 403 | PANTHER | PROTEIN TWIN LOV 1 | 1 | 390 | - | - | |
| Dere13g1334 | 403 | Gene3D | PAS domain | 258 | 399 | - | - | |
| Dere13g1334 | 403 | ProSiteProfiles | PAS repeat profile. | 16 | 65 | IPR000014 | - | |
| Dere13g1334 | 403 | CDD | PAS | 27 | 130 | IPR000014 | - | |
| Dere13g1334 | 403 | FunFam | protein TWIN LOV 1 | 258 | 395 | - | - | |
| Dere13g1334 | 403 | FunFam | Protein TWIN LOV 1 isoform D | 30 | 222 | - | - | |
| Dere13g1334 | 403 | Pfam | PAS domain | 39 | 131 | IPR000014 | - | |
| Dere13g1334 | 403 | Pfam | PAS domain | 258 | 356 | IPR000014 | - | |
| Dere13g1334 | 403 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 261 | 357 | IPR035965 | - | |
| Dere13g1334 | 403 | Gene3D | PAS domain | 19 | 141 | - | - | |
| Dere13g1334 | 403 | NCBIfam | PAS domain S-box protein | 42 | 128 | IPR000014 | - | |
| Dere13g1334 | 403 | NCBIfam | PAS domain S-box protein | 271 | 356 | IPR000014 | - | |
| Dere13g1334 | 403 | CDD | PAS | 267 | 359 | IPR000014 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere13g1334 | Dere-ChrDere13 | 18336723 | 18340239 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere13g1334 | 15 | 388 | AGC Kinase Gene Family | AT5G58140 | 32.688 | 1.09e-62 | 215 |