Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1331 ATGGCTATGGCTGGTTCTAAGGTCTACGGCTCTTCAAATATCACAGCTTTACTCCAAAACGAAACCCTTCCTTCCTCCTCTCATGTTCTTGACTCTCTCTGGGTTCACCCCTCTGAGCCGTCCTTTCAAGGGTCAAAACCTCTGATTGATTTCGAGAATGTTAGCCGAAGCACAGTCACAGAATTGCCGTTCTTCCAAGCTCTAGACAAAGAGGAGAACCATGAAGAGGAATACGAGGCGTGCTTTCATCAACCTGGAAAGAAGAGGAGGCTCACAGGCGAGCAAGTTCAATTCCTTGAGAGGAGCTTCGAGGTAGAAAACAAGCTCGAACCTGAAAGAAAAGTTCAACTTGCAAAAGAGCTTGGATTGCAGCCAAGGCAAGTAGCTATTTGGTTTCAAAATCGAAGGGCTCGGTTCAAGACAAAACAGCTTGAGAAAGACTATGGCTCCTTGAAAGCTAGCTTTGACAAACTCAAAGGTGACTATGATACTCTTCTTCACGAGAATGAGAAGTTAAAAGAAGAGGTGAATTCTCTGAAGAACAAATTGACAGCCAGAGACAAAGAGAAACAAGAGACACATGAGAAGTGTCATGAAGTTTTGATCTCAAACAATGGAGCTTCTGAAAATGGCTCAAAAGTGAAAGGCATCCCTATGGAAATAAGCAAACAAGAAGATGCCAATTCAGCCAAAAGTGATGTGTTTGATTCGGATAGCCCACACCAGACTGCAGGTTCGTCCCATGCCTTCGAACCAGAGCACTCAGATTTCTCACAGGACGAAGACGATATCCTCAGCCATAACCTCCTGAGTCTCCCATGCTTACCAAAGGTTGAAGAAGATCCTTGTAACTTTGGGTTCCCAGATGAAGATCAAACCTTCTATCTGACGCCGAAACCCGATGAAGAAAAAGAGATGCATGAGAAAGAAGGCGAATTACTGAATCCCACTACAGAAAGTCAAGGTTCTGGTATGGTTTCTACTTGTACAAATAGGATTGGTAAGGACTTTTCAGGCCTTGGTTGCTTATTTTTCAAGACGTTGATAGCTTAG 1053 0.4378 MAMAGSKVYGSSNITALLQNETLPSSSHVLDSLWVHPSEPSFQGSKPLIDFENVSRSTVTELPFFQALDKEENHEEEYEACFHQPGKKRRLTGEQVQFLERSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGSLKASFDKLKGDYDTLLHENEKLKEEVNSLKNKLTARDKEKQETHEKCHEVLISNNGASENGSKVKGIPMEISKQEDANSAKSDVFDSDSPHQTAGSSHAFEPEHSDFSQDEDDILSHNLLSLPCLPKVEEDPCNFGFPDEDQTFYLTPKPDEEKEMHEKEGELLNPTTESQGSGMVSTCTNRIGKDFSGLGCLFFKTLIA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1331 350 SUPERFAMILY Homeodomain-like 78 144 IPR009057 -
Dere13g1331 350 Pfam Homeodomain 87 140 IPR001356 GO:0003677
Dere13g1331 350 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Dere13g1331 350 SMART HOX_1 84 146 IPR001356 GO:0003677
Dere13g1331 350 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Dere13g1331 350 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Dere13g1331 350 Coils Coil 155 189 - -
Dere13g1331 350 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Dere13g1331 350 MobiDBLite consensus disorder prediction 233 249 - -
Dere13g1331 350 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 69 241 IPR045224 GO:0003700
Dere13g1331 350 Pfam Homeobox associated leucine zipper 142 183 IPR003106 GO:0006355|GO:0043565
Dere13g1331 350 MobiDBLite consensus disorder prediction 183 260 - -
Dere13g1331 350 Gene3D - 80 148 - -
Dere13g1331 350 FunFam Homeobox-leucine zipper protein HAT5 80 144 - -
Dere13g1331 350 MobiDBLite consensus disorder prediction 183 199 - -
Dere13g1331 350 CDD homeodomain 85 143 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1331 Dere-ChrDere13 18295098 18297518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1331 24 193 Homeobox Transcription Factor Family AT3G01470 49.419 7.73e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere13g1331 Homeodomain 3.1e-16 CL0123