Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1330 ATGAGTCGCAAGAGAGAGAAACCCTACTTTTCCCGCCCCGCCTCATACTCCAACTCTGTGCCCAAGCGGCGTCGGCCTCTTCCCGATCATGCTCCGTCACCCGCCGCCGCCAACGGCTCCGACAAGCACACTACAAGGCCAGCGCCACCATCCGCTGTGGTGGTTATGGGTCTCCCTTTAGACTGCTCCGTTCTCGATCTCAAATCCCGATTGGAGATCTACGGTCCCATATCCCGCATCCGCATGGACCGCGACGGGGTTGGCTACATTACCTACAGGAACAAGGAATCTGCCGATGGCGCCATAGCTGCCGCTCTTGACCCTTCTTTTGGAATCACTATCAATTCGAAAAAGGTCCAGGTATTGTGGGCAACTGATCCTCTAGCCATGTGGAGGGAAGGAATAGGTAATAGTAACAAGGGGAAAGGGTCTACGTCAAAACTTGTGCGAGCTGAAATACCCTTGAGCAGACATGGAAGAGGTAATAAACTCGCTTCAGCTGTAGTGAATCCGAAAAATAGTGAGAGTAGCTCAGGTCTAAACGTGCCTTTCAGGGGCAGAGAAATCGTCGCTTATGATGATATCCTGTAG 591 0.5245 MSRKREKPYFSRPASYSNSVPKRRRPLPDHAPSPAAANGSDKHTTRPAPPSAVVVMGLPLDCSVLDLKSRLEIYGPISRIRMDRDGVGYITYRNKESADGAIAAALDPSFGITINSKKVQVLWATDPLAMWREGIGNSNKGKGSTSKLVRAEIPLSRHGRGNKLASAVVNPKNSESSSGLNVPFRGREIVAYDDIL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1330 196 SMART rrm1_1 52 122 IPR000504 GO:0003723
Dere13g1330 196 Gene3D - 32 164 IPR012677 -
Dere13g1330 196 MobiDBLite consensus disorder prediction 1 50 - -
Dere13g1330 196 PANTHER GEO13361P1-RELATED 41 158 - -
Dere13g1330 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 104 IPR000504 GO:0003723
Dere13g1330 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 126 IPR000504 GO:0003723
Dere13g1330 196 SUPERFAMILY RNA-binding domain, RBD 26 136 IPR035979 GO:0003676
Dere13g1330 196 CDD RRM_SF 53 121 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1330 1 196 Homeobox Transcription Factor Family AT1G27050 50.704 4.81e-58 179