Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1317 ATGGGAGCTGGGGATTACTATAAAATCCTCAAGGTGAATCGTAATGCGACCGATGAGGAGCTGAAGAAGGCGTACAAGAGATTGGCCATGAAATGGCATCCAGATAAGAATCAACAATCAGTCAAGAAAGAAGATGCTGAGGCTAAATTCAAGCAAATATCTGAAGCTTACGATGTTCTCAGCGATCCCAAGAAACGTCAGATCTATGATTTCTACGGTTATTATCCCCTCAATTCTAGTCGGGTTAATAAGAAAGATGATAAGGATGTAGAAATCGGAAAACAGAAGGACCACAAGGTAGGGGCAACTGAAAGGAAATTGGCGTTCAGTCTCGAAGAACTTTACAAAGGTTGCAAAAGGAAGTTGAAAATCTCAAGGAACGTTGTCGATGAATTTGGCAAGCTAAACTCTGTTGAAGAAATCTTAAAGATTGATATAAAACCTGGTTGGAAGAAGGGCACAAAAATAACTTTTCCTGAGAAAGGCCATCAAGAACCAGGAAGTACTCCAGCTGATTTAATTTTTGTGGTGGATGAGAAGCCTCATGCTTTTTTCAAGAGAGTAGGAAATGATTTGGTGGTCACCCAGAAGATATTGCTTGTTGAGGCTCTCATCGGAAAGACTATCAACTTGACAACGTTGGATGGAAGAGACCTCACAATTCCAGTGAGCGATATTGTGGAGCCAGGCTATGAATTGGTGGTCCCAAATGAAGGGATGCCGATTTCAAAGGAACCAGGCAAGAAAGGGAACCTCAGAATTAAGTTTGATGTTATGTTTCCTTCAAGGCTGACCACACAACAGAAGTATGATCTAAAAAAGATTCTGAGTGAAGCTGATAGCTAA 846 0.4102 MGAGDYYKILKVNRNATDEELKKAYKRLAMKWHPDKNQQSVKKEDAEAKFKQISEAYDVLSDPKKRQIYDFYGYYPLNSSRVNKKDDKDVEIGKQKDHKVGATERKLAFSLEELYKGCKRKLKISRNVVDEFGKLNSVEEILKIDIKPGWKKGTKITFPEKGHQEPGSTPADLIFVVDEKPHAFFKRVGNDLVVTQKILLVEALIGKTINLTTLDGRDLTIPVSDIVEPGYELVVPNEGMPISKEPGKKGNLRIKFDVMFPSRLTTQQKYDLKKILSEADS 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1317 281 Gene3D - 102 180 - -
Dere13g1317 281 PRINTS DnaJ domain signature 45 65 IPR001623 -
Dere13g1317 281 PRINTS DnaJ domain signature 7 25 IPR001623 -
Dere13g1317 281 PRINTS DnaJ domain signature 25 40 IPR001623 -
Dere13g1317 281 PRINTS DnaJ domain signature 65 84 IPR001623 -
Dere13g1317 281 Gene3D DnaJ domain 1 92 IPR036869 -
Dere13g1317 281 ProSiteProfiles dnaJ domain profile. 5 73 IPR001623 -
Dere13g1317 281 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 276 - -
Dere13g1317 281 FunFam Dnaj homolog subfamily b member 98 180 - -
Dere13g1317 281 CDD DnaJ_C 110 264 - -
Dere13g1317 281 SMART dnaj_3 4 65 IPR001623 -
Dere13g1317 281 Gene3D - 182 262 - -
Dere13g1317 281 CDD DnaJ 5 62 IPR001623 -
Dere13g1317 281 FunFam DNAJ heat shock family protein 181 276 - -
Dere13g1317 281 SUPERFAMILY HSP40/DnaJ peptide-binding domain 184 269 IPR008971 GO:0006457|GO:0051082
Dere13g1317 281 SUPERFAMILY Chaperone J-domain 4 77 IPR036869 -
Dere13g1317 281 Pfam DnaJ domain 5 70 IPR001623 -
Dere13g1317 281 SUPERFAMILY HSP40/DnaJ peptide-binding domain 106 182 IPR008971 GO:0006457|GO:0051082
Dere13g1317 281 ProSitePatterns Nt-dnaJ domain signature. 50 69 IPR018253 -
Dere13g1317 281 Pfam DnaJ C terminal domain 105 261 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1317 Dere-ChrDere13 18099670 18101488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1317 6 72 C2H2 Transcription Factor Family AT1G74250 37.681 2.72e-10 58.9