Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1291 ATGTGGCAGTCTGATCGGACGTTCATTGGCGGTGCTGGTATGGATCCGGCTGCTTTGAATATGATGAACGAGGGTTCCTTTGCGAATGGGAATGCCAATACGGCGCCGTATACCTTGGCGGAGATCTGGCCGTTCCCGATGAATGGCGGTGCGGGTATCGGGGAGTCCGGAGGCGGGTTGGGTTTGAGGAGGCCGCAGTTCGGGCAAAATTTGGGGCAGTTTAGTGATTTTATGTCGGGTCCGAATCCGGATGGCCCGGGTAATGATCCGATCAGTTCGGAGCAGAGAGCGAATGGGGTCAATAGGAAGAGACGCGATTCTGAGGATGAATTGGCCAAAGGCGTCTCCGCCACCAGCAACGGTGGCGCTGGCAATAGCAATGGCGTGAATGATGGTGATGGAAAACGGCTTAAAACGTCAGGAAATAGGAATGAGAGCCGTGAAACTAAGGCTGAAGCAGAAACCAGTTCAGGAAAGCCTGCGGAGCAAAGTACTCAGCCAGCTCCTGAGCCTCCTAAGCAAGCTTACATCCATGTACGTGCGAGAAGGGGTCAAGCTACTGATAGCCACAGTTTAGCCGAGAGAGCTAGGAGGGAAAAAATAAGTGAGAGGATGAAAATTCTTCAGGATTTGGTTCCTGGTTGTAATAAGGTAATTGGGAAAGCATTGGTCCTCGATGAGATAATTAATTATATTCAGTCACTACAACGCCAAGTTGAGTTCTTGTCAATGAAGCTTGAAGCTGTAAATTCAAGAGTGAACCCTGGCTTGGAAGTGTTTCATCCTAAAGATTTTGGTCAACAAGCATTCAATACAGCTGGGATGGCAATTGGTTCTCAAGCTGCGCAAGATTTTAGCCGGGGTTCGTCGCCGGAGTGGTTACATATGCAGGTAGGAGGTGGTTTTGAAAGAACAAGATAA 921 0.494 MWQSDRTFIGGAGMDPAALNMMNEGSFANGNANTAPYTLAEIWPFPMNGGAGIGESGGGLGLRRPQFGQNLGQFSDFMSGPNPDGPGNDPISSEQRANGVNRKRRDSEDELAKGVSATSNGGAGNSNGVNDGDGKRLKTSGNRNESRETKAEAETSSGKPAEQSTQPAPEPPKQAYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRVNPGLEVFHPKDFGQQAFNTAGMAIGSQAAQDFSRGSSPEWLHMQVGGGFERTR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1291 306 CDD bHLH_AtBPE_like 176 260 - -
Dere13g1291 306 SMART finulus 191 241 IPR011598 GO:0046983
Dere13g1291 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 235 IPR011598 GO:0046983
Dere13g1291 306 FunFam Basic helix-loop-helix transcription factor 182 254 - -
Dere13g1291 306 MobiDBLite consensus disorder prediction 98 112 - -
Dere13g1291 306 MobiDBLite consensus disorder prediction 56 172 - -
Dere13g1291 306 MobiDBLite consensus disorder prediction 156 170 - -
Dere13g1291 306 MobiDBLite consensus disorder prediction 136 155 - -
Dere13g1291 306 Pfam Helix-loop-helix DNA-binding domain 189 236 IPR011598 GO:0046983
Dere13g1291 306 Coils Coil 232 252 - -
Dere13g1291 306 Gene3D - 182 256 IPR036638 GO:0046983
Dere13g1291 306 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 94 274 IPR024097 GO:0006355
Dere13g1291 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 253 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1291 Dere-ChrDere13 17804824 17807486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1291 14 264 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 55.731 3.87e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere13g1291 HLH 2.6e-08 No_clan