Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1283 ATGAAGATAATCTCTCTCACCGCTTCAATCTTGCTTCTTTATTCATTATCCCTTTGTGTTTCTGTCGAGGATGACGTGATTTGCCTCCAAGGCGTGAAGAACTCATTCTCAGACCCAAATGGAAAACTCAGCTCTTGGAGCTTCACCAACACTTCCGTGGCTTCAATCTGCCAGCTTGTCGGCGTTTCTTGCTGGAACGAGAAGGAGACCCGCCTCATCAGCCTCCAGCTCCGTGATATGCAGCTCGCCGGAAAGCTTCCCGAGTCGCTCAAGTATTGCCGGAGCCTCCAGACCCTCGAACTCTCTGGTAACGCTCTCTCCGGCTCGATCCCTCCTTACATCTGTACCTGGTTGCCTTACTTAGTGACCTTAGATCTCTCCGGTAACCAAATCTCGGGTTCAATCCCACCCGAGATTGCAAATTGTAAGTTCCTGAATACCCTCGTTCTGAGTGATAACAAGTTATTGGGTTCGATCCCTTATGAGTTGGGTCGGCTTGACCGATTGAAGAGGCTCTCTGTTGCTAATAACGATCTTTCGGGTTCTATTCCTCCGGATTTGTCCAAATTTGATAAAGCTGATTTTGATGGGAATAGCGGGTTATGTGGGAAGCCTGTTGGGTCAAAGTGTGGTGGGTTGAGTCGTAAAAGTCTTGGGATAATTATAGTTGCCGGTGTTGTTGGAGCCATGGGATCTTTATTTTTGGGTTTTGCCATTTGGTGGTGGTTCTTCCTCAGGGTCGGTGAGAAAAAGAAAGGGTATATTGGTTCTAGTGGTGGGAAGCACGTGAGCGATTGGATTGAGTTGTTGAAGTCACACAAGCTTGCCCAAGTCTCTTTGTTTCGGAAACCCATCGTGAAGGTTAGATTAGCTGATTTGCTAGTGGCAACCAATGGTTTCCATCCAGAAAATATTGTGATTTCTACTCGAACAGGGGTCTCTTATAAGGCAGTTTTGCGTGATGGATCGGCTCTTGCCATAAAGAGGCTTAATTCTTGTAAACTTAGTGAGAAGCAATTTAAATCAGAGATGAATAGGCTAGGGCAGCTCAGACACCCTAATTTGGTACCTTTATTGGGTTTCTGTATGGTGGAAGAAGAGAAGCTTTTAGTGTACAAGCACATGTTCAATGGAACCTTGTATTCTCAGTTGCATAAAAATGGGCATACTAATAATAGTCAGTATAGTTTTCTGGACTGGCCAACGAGGCTGAGGATTGGGATAGGTGCAGCCAGAGGCCTTGCTTGGCTTCACCATGCTTGTCAACCTCCATATATTCACCAGAAAATCAGTTCAAATATAGTCCTTCTTGACTATGATTTTGAAGCCCGCATAACTGATTTTGGATTGGCAAGGCTTGTGGTTACTCGTGATCCCAATGATAGCTCCTTTGTGAATGGTGATCTGGGTGAGTTTGGTTATGTTGCTCCAGAGTACTCAAGCACCATGGTTGCTTCTCTGAAAGGGGATGTTTATGGTTTGGGAGTAGTTCTCTTGGAATTGGTCACAGGACAGAAACCAGTGGAAGTAAACACTGGAGGGGAAGGATTCAAAGGGAATTTAGTGGATTGGGTCAATTGGTTATCTATCACAGGTAGAAATAAGGATGCCATAGATAAAGCTTTGTTGAATGAAAGTCCTGAACATGGTGATGAATTTATGCAGTTCATGAAGGTTGCCATGTCTTGTGTTGTTTCTAGGCCTAAAGACAGACCTTCCATGTACCAAGTTTTCTCCTCACTGAAGGGCATGGCTGAGAAACACGGTTTCTCAGATCAGTACGATGAATTCCCAGTTGTCAGTGGCAAACAAGAGTCTGACTACAACAAGAATTAG 1836 0.4477 MKIISLTASILLLYSLSLCVSVEDDVICLQGVKNSFSDPNGKLSSWSFTNTSVASICQLVGVSCWNEKETRLISLQLRDMQLAGKLPESLKYCRSLQTLELSGNALSGSIPPYICTWLPYLVTLDLSGNQISGSIPPEIANCKFLNTLVLSDNKLLGSIPYELGRLDRLKRLSVANNDLSGSIPPDLSKFDKADFDGNSGLCGKPVGSKCGGLSRKSLGIIIVAGVVGAMGSLFLGFAIWWWFFLRVGEKKKGYIGSSGGKHVSDWIELLKSHKLAQVSLFRKPIVKVRLADLLVATNGFHPENIVISTRTGVSYKAVLRDGSALAIKRLNSCKLSEKQFKSEMNRLGQLRHPNLVPLLGFCMVEEEKLLVYKHMFNGTLYSQLHKNGHTNNSQYSFLDWPTRLRIGIGAARGLAWLHHACQPPYIHQKISSNIVLLDYDFEARITDFGLARLVVTRDPNDSSFVNGDLGEFGYVAPEYSSTMVASLKGDVYGLGVVLLELVTGQKPVEVNTGGEGFKGNLVDWVNWLSITGRNKDAIDKALLNESPEHGDEFMQFMKVAMSCVVSRPKDRPSMYQVFSSLKGMAEKHGFSDQYDEFPVVSGKQESDYNKN 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1283 611 SUPERFAMILY Protein kinase-like (PK-like) 278 581 IPR011009 -
Dere13g1283 611 Gene3D Ribonuclease Inhibitor 23 212 IPR032675 -
Dere13g1283 611 ProSiteProfiles Protein kinase domain profile. 300 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1283 611 CDD STKc_IRAK 308 584 - -
Dere13g1283 611 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 22 211 - -
Dere13g1283 611 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 58 583 - -
Dere13g1283 611 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 261 374 - -
Dere13g1283 611 Gene3D Phosphorylase Kinase; domain 1 260 374 - -
Dere13g1283 611 Pfam Leucine rich repeat N-terminal domain 23 65 IPR013210 -
Dere13g1283 611 Pfam Protein tyrosine and serine/threonine kinase 323 580 IPR001245 GO:0004672|GO:0006468
Dere13g1283 611 Gene3D Transferase(Phosphotransferase) domain 1 375 605 - -
Dere13g1283 611 Pfam Leucine Rich repeat 92 108 IPR001611 GO:0005515
Dere13g1283 611 Pfam Leucine Rich repeat 119 133 IPR001611 GO:0005515
Dere13g1283 611 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 375 603 - -
Dere13g1283 611 SUPERFAMILY L domain-like 19 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1283 Dere-ChrDere13 17727412 17729247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1283 22 606 Receptor kinase-like Gene Family AT1G27190 67.692 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Dere13g1283 PK_Tyr_Ser-Thr 4.1e-29 CL0016