Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1281 ATGCATCGCACGTGCTCACAGTGTGGCAGCAACGGCCACAACTCCCGAACGTGCGCCGACGGTAATGGCGCCGAAGATAAAGGTATCTTACTGTTCGGCGTTCGAGTCACACAAGGGAACTCGTTTAGGAAGAGCGCTAGCATGACCGATCTCTCCCAGTACGAGCAGCCGCCGCCTCAGGACTCCAACGCCGACGCCGGTTACGCCTCTGACGACGTCGTTCACGCCTCAGGTCGCAGCCGCGAGCGAAAGAGAGGCGTTCCGTGGACGGAAGAGGAGCATAGGCTATTCCTGTTGGGTTTACAAAAGGTTGGAAAAGGAGATTGGAGAGGGATTTCTAGAAACTTCGTGAAAACTCGTACACCAACTCAGGTGGCCAGTCATGCTCAGAAGTACTTCCTCCGCCGCCACAACCAGAACCGGAGACGCCGGAGATCTAGTCTATTTGATATCACCACCGATACGGTGATGGAATCCTCAACGATAACGGAGGACGGAAGAGTCCACCAAGAAGCGGTACCGCCCAAATATCCCCATTACGGCGGCTTTGGTCGTTATGATTTTCCGATGACGATACCTCCGGCGATGTTGCCGGTAGGAGCTAAGCCGATAAGGCCGACGCCGATTCTGCCAGTTGCTCCATCGTCGAAATTGGCTAAGTTAAACTTGAAGGAGAAAGCTCACGTGGACGACCCTCTGCCACTGTCGCCGGCGGCGACTAGCAATGAGCAGTCTTCGACAAGTAGCCGGTCACGGTCGTTGGCTTTCGAGGTGATGTCAGGGAAGCTGAGCGGTGGTGGGGATAGCAATAGCATGATCAGTGTTGCTTGA 831 0.5511 MHRTCSQCGSNGHNSRTCADGNGAEDKGILLFGVRVTQGNSFRKSASMTDLSQYEQPPPQDSNADAGYASDDVVHASGRSRERKRGVPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTITEDGRVHQEAVPPKYPHYGGFGRYDFPMTIPPAMLPVGAKPIRPTPILPVAPSSKLAKLNLKEKAHVDDPLPLSPAATSNEQSSTSSRSRSLAFEVMSGKLSGGGDSNSMISVA 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1281 276 MobiDBLite consensus disorder prediction 1 20 - -
Dere13g1281 276 PANTHER TRANSCRIPTION FACTOR KUA1 1 228 - -
Dere13g1281 276 Gene3D - 87 138 - -
Dere13g1281 276 Pfam Myb-like DNA-binding domain 88 133 IPR001005 -
Dere13g1281 276 MobiDBLite consensus disorder prediction 237 253 - -
Dere13g1281 276 MobiDBLite consensus disorder prediction 229 253 - -
Dere13g1281 276 ProSiteProfiles SANT domain profile. 84 137 IPR017884 -
Dere13g1281 276 MobiDBLite consensus disorder prediction 47 68 - -
Dere13g1281 276 NCBIfam myb-like DNA-binding domain, SHAQKYF class 84 135 IPR006447 GO:0003677
Dere13g1281 276 MobiDBLite consensus disorder prediction 1 18 - -
Dere13g1281 276 SUPERFAMILY Homeodomain-like 83 136 IPR009057 -
Dere13g1281 276 CDD SANT 88 133 IPR001005 -
Dere13g1281 276 SMART sant 85 135 IPR001005 -
Dere13g1281 276 ProSiteProfiles Zinc finger CCHC-type profile. 5 18 IPR001878 GO:0003676|GO:0008270
Dere13g1281 276 ProSiteProfiles Myb-like domain profile. 81 133 IPR001005 -
Dere13g1281 276 FunFam transcription factor MYB1R1 87 138 - -
Dere13g1281 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 137 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1281 Dere-ChrDere13 17695924 17697047 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere13g1281 Myb_DNA-binding 7.9e-11 CL0123