Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1278 ATGAAGAGGTCTAGAGACGATGTTTATATGAGCTCTCAACTCAAACGGCCCATGGTGTCTTCCCGAGGAGAAACCTCTGGGCAACCGCAAATGATGGCTGGAGGTGCTCAGAAACTTACAACAAATGACGCCTTAGCATATCTCAAGGCAGTAAAGGAAATATTTCAAGATAAAAGGGAAAAGTATGATGATTTTTTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAGTTGATACTGTGGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCATAGAGATCTAATATTGGGATTTAATACCTTCTTGCCGAAGGGGTATGAAATCACACTTCCATTGGAGGATGAACCTCAGCAAAAGAAGCCTGTTGAATTCGAAGAAGCTATTAATTTTGTGAACAAGATTAAGTCTCGGTTTCAAGGTGATGATCATGTCTACAAGTCGTTTCTTGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATTTCTGAGGTCTACCAGGAGGTTGCTTCACTTTTCCATGACCACCCAGACCTTCTTGATGAGTTCACTCACTTTCTTCCTGATACTTCAGCAACAGCATCTACACATTATGCTTCTTCTGCTCGGAATTCTATGCTTCGCGATAGGAGCTCTGCAATGCCAACACTAAGGCAAATGAATGTTGAAAAGAAAGAAAGGACCATGGCTTCCCATGATCATGACCTTAGTGTTGATCGTCCTGATTCAGATCATGACAGAGTTCTGATGAAGGCAGAAAAGGAGCAGAGGAGGCGTGTTGAGAAGGAAAAGGATCTCAGAGAAGAGAGGGATAGGAGAGAACAGGAATGTGATGATAGAAATTATGGGCATGATGGTAGCCGGGACTTTACCATGCAGCGTTTCCCCCACAAACGGAAATCTGGTCGTAGAACTGATGACGTCAGTGCTGAACCATTGCATCAAGGTGGTGATTCTGATGAAAATTTTAGCATGCGCCCTGTGTCATCCACTTGTGATGACAAAAGTTCTGTGAAGTGTATGTATAGTCAAGAGTTTGCTTTCTGTGAAAAGGTCAAGGAGAAATTACGAAATCCTGATGTTTATCAGGAATTTTTGAAGTGTCTACATATCTATAGCAGGGAAATAATTACCCGGCAAGAATTGGAGTCCTTGGTCGGTGATTTACTGGGAAAATATCCAGACCTTATGGAGGGGTTTGGTGAATTTTTGTCTAGATGTGAGAAGAATGATGGATTCCTTGCTGGTGTCATGAATAAAAAGTCCTTTTGGAATGAAGGGATTGCATCTAAACCGCCAAAGGTAGAGGACAAGGATAGAGATAGAGGTCGAGATCATGATAGGGATGATCGGGTTAAAGAAAGAGATCGTGAACTCCAAGAAAGGGACAAAACTGCTTCGTTCATTAACAAGGATGTTTCAGGTCCCAAGATGTCTCCATTTTCCAGCAAGGATAAGTATTTGGCAAAACCTATAAATGAGCTAGACCTTTCTAACTGTGAGCAATGCACTCCCAGCTACCGTCTCCTACCCAAAAATTACCCAATACCTTCAGCTAGCCAGAGAACGGAGCTTGGTGCTGAAGTATTGAATGACCATTGGGTTTCTGTCACTTCGGGAAGTGAGGATTATTCTTTTAAACACATGCGCAAGAATCAGTATGAAGAGAGCTTGTTTAGATGCGAAGATGACAGATTTGAACTTGATATGTTGTTAGAGTCTGTGAATGTGACAACCAAGCGAGTAGAAGAGCTCTTGGAGAAGATCAATAGTAATAATATTAAAGCAGATAGTCCAATTCGTATTGAAGATCACCTGACAGCTCTAAATCGAAGGTGCATTGAACGACTATATGGTGACCATGCACTTGATGCAGTAGAGGTGTTAAGAAAGAATGCACCGCTAGCTTTGCCAGTCATTTCAACTCGTTTGAAGCAAAAACAAGAAGAGTGGGCAAAGTGTCATGCTGATTTTAATAAAGTTTGGGCTGAAGTATATGCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAACAGGATACAAAAAGCTTGAGCACAAAAGCCTTACTGGCGGAAATCAAAGAAATTAGTGAGAAGAAACACAAAGAAGATGATGTTCTTCTTGCAATCGCTGCTGGAAATAGACGACCTATTATTCCAAATTTGGAATTTGAGTATCCTGATCCAGATATACATGAAGATCTGTATCAACTTATAAAATATTCCTGTGGAGAAGTTTGTACAACTGAACAGCTGGATAAAGTTATGAAGATTTGGACAACATTTTTAGAACCCATGCTTGGTGTTCCTTCTCGACCCCAGGGTGCTGAAGATACAGAAGATGTTGTCAAGGCTAAGCATAATTCGATAAAAAGTGGCACTGCAAGTTTTGGTGGCAGTGATGGTAGTCCTGGTGTAGGGGCAAACATAATAAATCCAAAACAATTAAATACATCTGGAAATGGGGATGAGAGTATCTCATTAGAACAATCAAATTCCAAGACTGAAACTTTGGATTATAGTAAACAGCAGCATGATGGAATGCATATTAATGCATCCATGCCTGATGAAGTATCAGGAGTCGACAAGCAAGGCCATTCCAATGAATGGTTAGTGAATGCTAATGCCTCAATGGCCTCTGGAATGGAACAAAGTAATGGGAGAACATACATAGATAATGCATCAGGGCTTACTGCTGCTCCATCTAGACCTGGTAATGTTACTGCTGAGGGAGGACATTTACCTTCATCAGAGGGTGGTGATTCTACCAGACCCGCTACACCCACTAATGGGGGCATTCCTGGTAGCAAAGTTCATAGACACCAAGAAGAACATCTTGGGCACTTCAAGAGTGAAAGAGAAGAGGGCGAACTATCCCCAAATGGAGATTTTGAGGATAACTTAGCAGTTTATGGAGATACTAGTTTAACAGCAGTAGGGAATAAAGGAAAGAATGGTGTGCAATACCCAAATAGACGTGGGGAAGATGGTTGTGGTGAGGCAGGAGGAGAAAATGATGCTGATGCTGATGATGAAGGTGAAGGAAGTCCTCATAGGTCATCAGAGGACAGTGAGAATGCTTCTGAAAATGGTCACGTTTCGGGAAGTGAGTCTGCTGATGGTGAGGAGTGTTATCAAGAAGAGCATGAGGAGGATGGGGAACACGAACACGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCCAATGATGGGGAAGGAGACGGAACCTCATTGCCATTTTCAGAACGCTTTTTACTATCTGTAAAGCCTCTGGCAAAGCATGTTCCCCCTGCATTGCATGAGAAAGAAAGGGTTTCTCGAGTGTTTTATGGCAACGATTCCTTTTATGTGCTTTTTAGGCTTCACCGAACATTGTATGAGAGGATACAATCAGCAAAGATCAACTCATCATCTGCGGAAAAGAAGTGGAAAGCTTCAAATGATGCAAACTCTACTGATCAATATGGCAGATTCATGACTGCCCTTTATAATCTACTGGATGGTTCTTCTGACAACACAAAATTTGAGGATGACTGCCGAGCTATTATTGGAACTCAGTCATATGTGTTATTTACGTTAGACAAGTTGATATATAAGCTTGTTAAACAGCTGCAAGCTGTTGCCACTGATGATATGGATAACAAGCTTCTCCAACTTCATTCATATGAGAAGTCAAGAAAAAATGGAAGATTTTTTGATATAGTTTATCATGAAAATGCTCGTGTTCTTCTTCATGATGAGAACATATACCGTATTGAATGTTCATCTACACCAACACGACTATATATTCAATTGATGGACTATGGACATGATAAGCCTGAGGCAACTGCTGTGTCTATGGACCCTAATTTTTCAGCCTATCTGCACAATGACTTCCTTTCTGTTGTTCCTGAAAAAAAGAAATCTGGGATCTTCTTGAAGAGGAATAAACGCAGATATGCCTGTGGTGATGAATTTTCAAGCCAGGCCATGGAAGGACTACAAGTTATTAATGGTCTGGAGTGTAAGATAGCTTGCAATTCATCTAAGGTTTCGTACGTGTTAGATACAGAAGACTTTTTATTTCGGATGAGAAGGAAAAGAAGAGCTTTGCATAACAGCTCATGCCATGAACAAACAAACTCTTCAAACATTTGTGCGAGGAGAGTACAGCGGTTCCGCAGAATGTTTTCCATTACATGA 4218 0.4104 MKRSRDDVYMSSQLKRPMVSSRGETSGQPQMMAGGAQKLTTNDALAYLKAVKEIFQDKREKYDDFLEVMKDFKAQRVDTVGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEPQQKKPVEFEEAINFVNKIKSRFQGDDHVYKSFLDILNMYRKENKSISEVYQEVASLFHDHPDLLDEFTHFLPDTSATASTHYASSARNSMLRDRSSAMPTLRQMNVEKKERTMASHDHDLSVDRPDSDHDRVLMKAEKEQRRRVEKEKDLREERDRREQECDDRNYGHDGSRDFTMQRFPHKRKSGRRTDDVSAEPLHQGGDSDENFSMRPVSSTCDDKSSVKCMYSQEFAFCEKVKEKLRNPDVYQEFLKCLHIYSREIITRQELESLVGDLLGKYPDLMEGFGEFLSRCEKNDGFLAGVMNKKSFWNEGIASKPPKVEDKDRDRGRDHDRDDRVKERDRELQERDKTASFINKDVSGPKMSPFSSKDKYLAKPINELDLSNCEQCTPSYRLLPKNYPIPSASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINSNNIKADSPIRIEDHLTALNRRCIERLYGDHALDAVEVLRKNAPLALPVISTRLKQKQEEWAKCHADFNKVWAEVYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKHKEDDVLLAIAAGNRRPIIPNLEFEYPDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDTEDVVKAKHNSIKSGTASFGGSDGSPGVGANIINPKQLNTSGNGDESISLEQSNSKTETLDYSKQQHDGMHINASMPDEVSGVDKQGHSNEWLVNANASMASGMEQSNGRTYIDNASGLTAAPSRPGNVTAEGGHLPSSEGGDSTRPATPTNGGIPGSKVHRHQEEHLGHFKSEREEGELSPNGDFEDNLAVYGDTSLTAVGNKGKNGVQYPNRRGEDGCGEAGGENDADADDEGEGSPHRSSEDSENASENGHVSGSESADGEECYQEEHEEDGEHEHDNKAESEGEAEGMADANDGEGDGTSLPFSERFLLSVKPLAKHVPPALHEKERVSRVFYGNDSFYVLFRLHRTLYERIQSAKINSSSAEKKWKASNDANSTDQYGRFMTALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATDDMDNKLLQLHSYEKSRKNGRFFDIVYHENARVLLHDENIYRIECSSTPTRLYIQLMDYGHDKPEATAVSMDPNFSAYLHNDFLSVVPEKKKSGIFLKRNKRRYACGDEFSSQAMEGLQVINGLECKIACNSSKVSYVLDTEDFLFRMRRKRRALHNSSCHEQTNSSNICARRVQRFRRMFSIT 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1278 1405 Pfam Sin3 family co-repressor 503 595 IPR013194 -
Dere13g1278 1405 MobiDBLite consensus disorder prediction 226 316 - -
Dere13g1278 1405 MobiDBLite consensus disorder prediction 433 470 - -
Dere13g1278 1405 MobiDBLite consensus disorder prediction 944 967 - -
Dere13g1278 1405 SUPERFAMILY PAH2 domain 119 191 IPR036600 GO:0006355
Dere13g1278 1405 MobiDBLite consensus disorder prediction 430 477 - -
Dere13g1278 1405 PANTHER SIN3B-RELATED 37 1265 IPR039774 GO:0003714
Dere13g1278 1405 Pfam Paired amphipathic helix repeat 145 189 IPR003822 GO:0006355
Dere13g1278 1405 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Dere13g1278 1405 Pfam Paired amphipathic helix repeat 362 406 IPR003822 GO:0006355
Dere13g1278 1405 Coils Coil 252 274 - -
Dere13g1278 1405 SMART hdac_interact2seq4b 501 601 IPR013194 -
Dere13g1278 1405 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Dere13g1278 1405 ProSiteProfiles PAH domain profile. 340 409 IPR003822 GO:0006355
Dere13g1278 1405 MobiDBLite consensus disorder prediction 226 329 - -
Dere13g1278 1405 MobiDBLite consensus disorder prediction 1057 1074 - -
Dere13g1278 1405 MobiDBLite consensus disorder prediction 14 30 - -
Dere13g1278 1405 MobiDBLite consensus disorder prediction 893 909 - -
Dere13g1278 1405 Pfam C-terminal domain of Sin3a protein 1121 1366 IPR031693 -
Dere13g1278 1405 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Dere13g1278 1405 Gene3D Paired amphipathic helix 338 411 IPR036600 GO:0006355
Dere13g1278 1405 ProSiteProfiles PAH domain profile. 122 192 IPR003822 GO:0006355
Dere13g1278 1405 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Dere13g1278 1405 FunFam Paired amphipathic helix protein SIN3 338 411 - -
Dere13g1278 1405 Gene3D Paired amphipathic helix 120 193 IPR036600 GO:0006355
Dere13g1278 1405 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Dere13g1278 1405 MobiDBLite consensus disorder prediction 799 844 - -
Dere13g1278 1405 SUPERFAMILY PAH2 domain 339 407 IPR036600 GO:0006355
Dere13g1278 1405 MobiDBLite consensus disorder prediction 893 1090 - -
Dere13g1278 1405 FunFam Paired amphipathic helix SIN3-like protein 121 192 - -
Dere13g1278 1405 MobiDBLite consensus disorder prediction 1 30 - -
Dere13g1278 1405 MobiDBLite consensus disorder prediction 817 844 - -
Dere13g1278 1405 MobiDBLite consensus disorder prediction 1019 1033 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1278 Dere-ChrDere13 17613603 17622658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1278 28 141 WRKY Transcription Factor Family AT4G12020 51.282 7.90e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere13g1278 Sin3a_C 1.7e-59 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1626 09 20801516 20817906 Dere13g1278 13 17613603 17622658 CCT
Dere13g1278 13 17613603 17622658 Dere13g1278 13 17613603 17622658 ECH