Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1272 ATGGAGGACTGTGATCTCTTGCCGGCAGATTCTGAAGAAGTTCATGTCTTGGCCGTCGATGACAGCCTTGTCGATCGGAAGGTCATCGAGCACTTGCTCAGGGTTTCAGCTTGCAAAGTTACTGCCGTGGACAGTGGAATGAGAGCTCTGCAATTCCTTGGGCTCAACGAGGAGAAATCCCCCTCTGAATCGGATGGCTTTGATGGTTTAAAGGTGGATCTAATCATCACTGATTACTGCATGCCTGGAATGACCGGCTATGAATTGCTCAAGAAAATCAAAGAATCGTCCACTTTCAGAGAAATCCCAGTGGTTATTATGTCTTCTGAGAATGTTCTGCCCCGTAGAGACAGGTGTTTGGAGGAAGGAGCAGAGGATTTCATAGTGAAGCCAGTGAAGTTATCTGACGTGGAACGCTTAAAGGATTACATGTCGACAAGAGAGGTTAAGGCGGGAAGTGAAGACAGAGAAGGCGGAGAGAGGCTCAACAAAAGAAAGCTGAGGGACACCTCTGATCTGGCGCCATCACCACCGTCCGTTTCGTCGTTAGCCCTATCAACATCATCATCATCGCCGTCGGCTTCGCCGTCACCGTCATCTTCGCCGTCCTTGCTTGACTCGCCGATCCGACGGCTCAAAATGACCGCCGCCGATTGA 657 0.5023 MEDCDLLPADSEEVHVLAVDDSLVDRKVIEHLLRVSACKVTAVDSGMRALQFLGLNEEKSPSESDGFDGLKVDLIITDYCMPGMTGYELLKKIKESSTFREIPVVIMSSENVLPRRDRCLEEGAEDFIVKPVKLSDVERLKDYMSTREVKAGSEDREGGERLNKRKLRDTSDLAPSPPSVSSLALSTSSSSPSASPSPSSSPSLLDSPIRRLKMTAAD 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1272 218 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 186 IPR045279 GO:0009736
Dere13g1272 218 SUPERFAMILY CheY-like 14 139 IPR011006 -
Dere13g1272 218 MobiDBLite consensus disorder prediction 174 206 - -
Dere13g1272 218 CDD REC_typeA_ARR 16 140 - -
Dere13g1272 218 Gene3D - 14 193 - -
Dere13g1272 218 MobiDBLite consensus disorder prediction 148 218 - -
Dere13g1272 218 SMART REC_2 14 144 IPR001789 GO:0000160
Dere13g1272 218 MobiDBLite consensus disorder prediction 148 171 - -
Dere13g1272 218 Pfam Response regulator receiver domain 16 137 IPR001789 GO:0000160
Dere13g1272 218 ProSiteProfiles Response regulatory domain profile. 15 145 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1272 Dere-ChrDere13 17558129 17559187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1272 8 210 Response Regulator Gene Family AT1G59940 61.321 1.00e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere13g1272 Response_reg 3.2e-21 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1272 13 17558129 17559187 Dere14g0527 14 5413817 5415607 ECH
Dere13g1272 13 17558129 17559187 Dere13g1272 13 17558129 17559187 ECH