Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1264 ATGTCGGCAAAATACGCTGAATATTTTGATCCCTCCCTTATTTTCATGATGCTCCTTGAAGATGACCCTCTTGTGTCTTTAGTTGGAGAAATTACGTTTCACACTTCATTTTCAAATATGGAAAAGGAATATGTCTGTGATATTTCTCCAACATCGGATAATGGTGGAGAAAATGGCCATTCTTCTGTGGAGAAGAGGCTAAGGTTATTTGGGTTTGAGCTGAAACCATCTAAGAACAACGAAAGCTGTGTTAAAGACTCCGTGGAAGGAGATGAAAGTGTGAACTCCTCGAACTCTGTTTCGTCCGGAGGGGAGAAAACTGATCAACAGGAGAAGACTTCATCTGCCACAAGAGACGCGTCAGATCAGGAGAAAAAGTTCGAGTGCCAATATTGTTTCAAGGAATTTGCAAACTCACAAGCATTAGGAGGCCACCAAAATGCCCACAAGAAAGAGAGAATGAAGAAGAAGAGGTTGCAGCTTCAAGCCAGGAAGGCTAGCTTAAGCTACTATCTTCAGCCTTTTCAAACTAACCCTGGTTTTGCCTTACATGGTTCTAGTACTCCTTGGTTCTTTGACCCCTCTTCCTATAACTCTGAGTTTTCTTTCCATGAAGAACCTCAGATTAGTTTCAATTCCAATGATCATGATACCATTAATATTCCTAATGGTTTTGATCCGAAATCAAAGTGGTATTCTCATCCATCCCACCTTCCTCCTCCTCAACGAGATACTTGTATGTTCACTTTATCACATATGGATAATAGGCCTTTCATCGTCCCTGCAGCCTCAAACCAGAGCCACAGTAATAAAGCTTTGGATCTTCAACTAGGCCTCAACTTGCAGTCAAATACAAGAGACTTCGTAAGAAGGACGTAA 879 0.4141 MSAKYAEYFDPSLIFMMLLEDDPLVSLVGEITFHTSFSNMEKEYVCDISPTSDNGGENGHSSVEKRLRLFGFELKPSKNNESCVKDSVEGDESVNSSNSVSSGGEKTDQQEKTSSATRDASDQEKKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARKASLSYYLQPFQTNPGFALHGSSTPWFFDPSSYNSEFSFHEEPQISFNSNDHDTINIPNGFDPKSKWYSHPSHLPPPQRDTCMFTLSHMDNRPFIVPAASNQSHSNKALDLQLGLNLQSNTRDFVRRT 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1264 292 MobiDBLite consensus disorder prediction 89 110 - -
Dere13g1264 292 ProSitePatterns Zinc finger C2H2 type domain signature. 129 149 IPR013087 -
Dere13g1264 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 127 154 IPR013087 -
Dere13g1264 292 SUPERFAMILY beta-beta-alpha zinc fingers 123 154 IPR036236 -
Dere13g1264 292 PANTHER ZINC FINGER PROTEIN 5 59 282 IPR044299 GO:0010090
Dere13g1264 292 MobiDBLite consensus disorder prediction 80 121 - -
Dere13g1264 292 Gene3D Classic Zinc Finger 100 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1264 Dere-ChrDere13 17469305 17473300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1264 48 279 C2H2 Transcription Factor Family AT1G10480 35.510 4.48e-17 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere13g1264 None None None