Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1260 ATGGCCTCCGACGCACATGGCTCCCGTCGTAAGCACCGGCGGTCATCCTCTCCCGAGGAAGTTGAGAGATCCTCGAAGCGTCACAAGCACCGCCACCTTAGCCACAGGCATCATAGGCACCGCCATGGTAGCAAGAAACGCGAAGAAGAATTTGAACTCGATGCCGAAACTGCTGATAAGGTTTCACCTCCAACTATCCCTCATAATTTTGGCCCAAATACGCGTGGGCCTGATGATGATGTGGAGGAGGGGGAGATTCTCGAAGAGGAGGGTTTTGGGAAAAAGCAGACGGAGTCTGATGCGGAGTCTGGTGAAATTATGCTCACGGGGGATCGAGGTCTCCGATCTGAAAAGGCAAATCTGGTACCTTTCCCTGAAGAAAATTTGTTGCATCGTGGAGATGCTGTTCCTCTTAAAGAGATAGTAGGGATAAATGCTAAAAGTTCAAAAACTAATAATGAGGACATTAGCAATGGTAAACTTACTAGTCTAGGATCAGATAGAAAAGATGGGACATGCCGTACGAGGTACACTGGTTATAGTATCCATGAAAGTGATGGTTCTCCCACCCATTCAAGTGCTGAGCCTCTAGATGGAAAGCATGCTAAAGCTTGTTCAGATGGTTTGGGCAATGGATATTTGGATTGTAAATCATTTGAAAAGGATAAAAGGAAGCATGGGGAACCTGTGTGTTCTGATGGAAATGAGAAGCTGAAAGGTGACTATGTCAATGAAGATTTGGAGGTTGATGGAGGAAAAGTAAGCATTCTTAAGAAGAACTCCTCCTCTGAAAGTGGAGGAGGCAAATATAGGACCTCACCTTCTAATCATAGATATAGGAGTCGATCCAGATCAAGTGGGCATACTCATGGTATGATAGAAGAATATGCTCATTCCAAGAGAAGGAACCCTGAGGAACATGGGATGCTTTCATATGCTGGAAGGCACAAGGCTGATTATGACCTTGATGAGGAAAGAATGGTGGAATCTGGCAGGGATCGTGGGCATATTAGTAGAGATTTGGTGGTAGATGATGGAAGGGAACGCAGTTCGAGTTATTATAATCAGGAGGCCCGGTATAGAGATTGGAGCAAGGAGAAGGATCTGGATAGGGACCTAAGAAGGGAAAAAGAACAAGAAAGGAGCTGGAATAGGGAGGATGACCGTGTACATAGGAGGGAAATAGAACGTGGAAGGAGCCATGAGAGTGATAGAAGGGGTTTTGAAAAAGATAGAAGTAGGGGAAGAGAAGTAGACAGGGATAGAAGAAGAGAAAAGGAACGTGATAGGAGCTGGGAGTGTGGTAGAAGGGAGAAAGAAAGAGCAAGGAGCAGGGACAGAACAAGGGGGGGAGAGAGAGATAGAGTTCGGGAGAGTGAAAGGGATGATAAGTATCAGGATAGAGATAAAATGAGGGACAGGGACAGGGACAGGGAGAGGCGAGATAATAGAAATAGGCATAAGGATAGAGACACTGTTGATAAAGAGAAGCATCTGGGTTATGATGATGGTAATGACAGCCGGGATAGGCACAGATACTCTAGGCATTCAAGACATGAAGAAATGGAAAACCATCGGGAGAGGAAAAGAAATTCAGAGCCTGCAATGGTTGATAACTCTATGGGCACTTCCTTGGAAGGGGGTGAAAACAAACTAGAAAGAGATGAGGATGAACAAGATGACTTAGATGAGAAGGTCACGTTGCAATTTGCTGAACAAGAGGAAGAAGATCTCAATAGAATTAAGGAGGAGAGTAGAAGGAGAAGGGAAGCAATATTAGAGAAATATAAGAAGCAGCAGCCGCAGCTGCATGAGCAAGCTGAACAAACTCCTGAAAATGAAGAAAAAGACAAGGATCCTGTGGATGTTCCTGCTGCTGTTTCTGAAGCTCCTGATGCTAATAATGGTGGTGTTGATGTTTTTGAAGAGGAACCATCTTTTGCTGTTGGTAAATCTCCTCCAGAAAATGGAAATGTTGCTTCTGTCAAGATCCCTGGTGCTGCTGGTGGCTTGGGTGAGGGTACTCCAAAGAGTGAGAGATCAGATGACAAGTTTTGTGATGACATATTTGGTGAGACGCCAACTGGAGTTCGCAAATCGGGAAAAGGAGATGGATTGAGGGTTGAGAGGAGTGGATTGCTTGACAATTGGGATGATGCAGAGGGGTATTACAGCTATCGTTTTGGTGAAATACTTGATGGCCGATATGAGGTTACCGCAGCTCATGGTAGAGGTGTCTTTTCAACAGTTGTTCGGGCAAAGAATCTTAGGACTGTTAATGGTGAGCCGGAAGAAGTAGCTGTAAAAATTATTCGTAATAATGACACTATGTACAAGGCTGGTTTGGATGAGTTGGTCATATTAAAGAAATTAGTAGGTGCTGATCCAGATGATAAGCGTCATTGTGTTCGTTTCCTTTCAAGTTTTAAGTACAGGAATCACCTTTGTTTAGTTTTTGAATCTCTTCATATGAATCTACGTGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTCAGGCTAACAGCCGTGAGAACTTATGCAAAACAACTTTTTATTGCACTGAAGCATCTTCGGAACTGTGGTGTTCTGCATTGTGATATAAAGCCAGATAATATGTTGGTGAATGAGGCAAAAAATGTGTTGAAGCTTTGTGACTTTGGTAATGCCATGTTTGCTGGAAAGAATGAAGTTACACCATATCTTGTGAGTCGCTTTTATCGTGCCCCTGAGATAATACTTGGCTTGCCATATGACCATCCATTGGATATGTGGTCTGTAGGCTGTTGTTTGTATGAACTCTATACTGGAAAAGTTCTCTTTCCAGGTCCTTCTAACAATGACATGCTGCGGCTTCACATGGAACTGAAGGGTCCTTTTCCGAAGAAGATGCTTCGTAAGGGAGCATTCATTGAACAGCATTTTGACCAGGACTTGAATTTTCTTGCTACAGAGGAGGATCCAGTAACGAAAAAGGCTATAAAGCGGTTGATTCTCAACATAAAGCCGAAAGATATCGGAACAATCATTTCTGGCTCTCCTGGGGAGGATCCAAAGATGTTAGCCAATTTCAAAGATCTTCTGGAGAAGATTTTTGTCCTGGATCCAGACAAGAGGTTGACAGTGTCACAAGCATTAAATCATCCATTCATCACTGGCAAGTGA 3165 0.437 MASDAHGSRRKHRRSSSPEEVERSSKRHKHRHLSHRHHRHRHGSKKREEEFELDAETADKVSPPTIPHNFGPNTRGPDDDVEEGEILEEEGFGKKQTESDAESGEIMLTGDRGLRSEKANLVPFPEENLLHRGDAVPLKEIVGINAKSSKTNNEDISNGKLTSLGSDRKDGTCRTRYTGYSIHESDGSPTHSSAEPLDGKHAKACSDGLGNGYLDCKSFEKDKRKHGEPVCSDGNEKLKGDYVNEDLEVDGGKVSILKKNSSSESGGGKYRTSPSNHRYRSRSRSSGHTHGMIEEYAHSKRRNPEEHGMLSYAGRHKADYDLDEERMVESGRDRGHISRDLVVDDGRERSSSYYNQEARYRDWSKEKDLDRDLRREKEQERSWNREDDRVHRREIERGRSHESDRRGFEKDRSRGREVDRDRRREKERDRSWECGRREKERARSRDRTRGGERDRVRESERDDKYQDRDKMRDRDRDRERRDNRNRHKDRDTVDKEKHLGYDDGNDSRDRHRYSRHSRHEEMENHRERKRNSEPAMVDNSMGTSLEGGENKLERDEDEQDDLDEKVTLQFAEQEEEDLNRIKEESRRRREAILEKYKKQQPQLHEQAEQTPENEEKDKDPVDVPAAVSEAPDANNGGVDVFEEEPSFAVGKSPPENGNVASVKIPGAAGGLGEGTPKSERSDDKFCDDIFGETPTGVRKSGKGDGLRVERSGLLDNWDDAEGYYSYRFGEILDGRYEVTAAHGRGVFSTVVRAKNLRTVNGEPEEVAVKIIRNNDTMYKAGLDELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLRLTAVRTYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLPYDHPLDMWSVGCCLYELYTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFIEQHFDQDLNFLATEEDPVTKKAIKRLILNIKPKDIGTIISGSPGEDPKMLANFKDLLEKIFVLDPDKRLTVSQALNHPFITGK 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1260 1054 MobiDBLite consensus disorder prediction 222 620 - -
Dere13g1260 1054 MobiDBLite consensus disorder prediction 1 113 - -
Dere13g1260 1054 PANTHER DUAL SPECIFICITY PROTEIN KINASE 471 1052 - -
Dere13g1260 1054 Pfam Protein kinase domain 738 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1260 1054 Coils Coil 545 565 - -
Dere13g1260 1054 MobiDBLite consensus disorder prediction 149 165 - -
Dere13g1260 1054 SUPERFAMILY Protein kinase-like (PK-like) 723 1053 IPR011009 -
Dere13g1260 1054 MobiDBLite consensus disorder prediction 287 534 - -
Dere13g1260 1054 FunFam serine/threonine-protein kinase PRP4 homolog 707 795 - -
Dere13g1260 1054 Gene3D Phosphorylase Kinase; domain 1 707 795 - -
Dere13g1260 1054 MobiDBLite consensus disorder prediction 149 168 - -
Dere13g1260 1054 MobiDBLite consensus disorder prediction 256 274 - -
Dere13g1260 1054 MobiDBLite consensus disorder prediction 27 44 - -
Dere13g1260 1054 SMART serkin_6 736 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1260 1054 Coils Coil 568 591 - -
Dere13g1260 1054 MobiDBLite consensus disorder prediction 564 620 - -
Dere13g1260 1054 FunFam Serine/threonine-protein kinase PRP4 homolog 796 1052 - -
Dere13g1260 1054 CDD STKc_PRP4 735 1051 IPR044092 GO:0004674|GO:0006468|GO:0045292
Dere13g1260 1054 MobiDBLite consensus disorder prediction 222 253 - -
Dere13g1260 1054 ProSiteProfiles Protein kinase domain profile. 736 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1260 1054 Gene3D Transferase(Phosphotransferase) domain 1 796 1052 - -
Dere13g1260 1054 MobiDBLite consensus disorder prediction 180 199 - -
Dere13g1260 1054 ProSitePatterns Serine/Threonine protein kinases active-site signature. 863 875 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1260 Dere-ChrDere13 17419712 17427610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1260 689 1053 MAP Kinase Gene Family AT2G18170 30.971 3.22e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Dere13g1260 Pkinase 3.6e-47 CL0016