Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1255 ATGATTCTTTGCCGTTCCGCTTTGGTGTTCCATCTCCATGTACCATCGATTCGATCCCAAGTGTTCTCCCAATTCAAGCATACTTACTCCTACCTCTGCACTTCTTCTTCGCCTTCTTTGGTTAATGTTCGCTTCCTTTCGCTTACCCATCCTCGCCAACGGCAATTCAGGGCGTTCGGGAGCGCTGTCGCAGCGGTAGCTGGTACGAAAGGGAGAGACACGTTCTTGGCGGAAGAAAACGTTTCGTGGAATTCACTTGGTCTGTCTGATACCATTTCCCGAGCTCTCTCGAGCATTGGCCTCGATAGGCCGTCTCTGGTTCAGGCTTCTTCTATACCATCTGTGCTTTCTGGAAAGGACGTGGTTATTGCAGCAGAGACTGGAAGTGGTAAAACACACAGTTACCTAGTTCCTCTAATTGATAAGCTACGAGATGCCCACCACAATTCTGAAAGTATTGTCCATAATCAAAAAAAGTCTCTGCCACATAATGTTCTGCTCGTTCTGTGCCCAAACGTACAACTATGTGAACAAGTAGTTCAGATGGCTAGCAGTCTTTGTGGGGACAATGGTGAACCAATCGTTAGTGTGGCAGCCATTTGTGGCAGACAGGGATGGCCAATTCATGCACCGGATGTCATTGTGATGACACCTGTTGCTCTTCTAAATTATGTGGACCAAAGCAGAAGCCGCCGAATGGAATTTATGCACGGTGTTAAATATGTGGTATTCGATGAAGCTGATATGCTTCTTTGTGGGAGCTTCCAGAATAAAGTAATACGTCTGATAAACTTGCTTCGCTTTGATGAAAAACTCTTGTCTCGATCAAAAGAATCAGTAGCAGAGTTACCAATGGAATTGGAATCTACCTTGCCATCACATAGTGCTTTATATGGTGAAGAGAAACAGCCAACTGAAGACACCATCTTAGAAGATGGGGATGATGATACTGAGCATATGGTTGATATCAATAATGAAGCTGATTCTATCAAAAGAAGAGACTGGAGGAGAGTGAGGAAAAATTACGAGCGTAGTAAACAGTATATTTTTGTTGCAGCCACACTTCCTGTGAATGGAAAGAAAACAGCTGGAGCCATATTAAAACATATGTTTCCTGATGCCGAGTGGGTTAGCGGAAATTATCTTCATTGTCATAATCCAAGATTGGAGCAGAGGTGGATTGAAGTTACTGTTGATACACAGGTGGATGAACTCATAAAGGCTGTGAGACAAGGTTTCACTAAAGATTTGGATAGTGCTGGTGGCATTTGTCGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTTGCAAAGATATTGCTCAGATCTGGGATTGAATGTTTACGCTATCATAAGGATCGCACCTTGGAGGAGCGAGCAAAAACCTTGGTTGAATTCCAAGAGAAAGGTGGTGTTCTTGTATGCACTGATGCAGCTGCTCGTGGTGTTGATATTCCAAATATCTCACATGTTATTCAGGCAGATTTTGCTGGTTCTGCTGTAGACTTCTTGCATAGGGTTGGTCGCACAGCTAGAGCTGGTCAGTTTGGACTTGTCACTAGCACGTACACTGAATCTAACAGGGAGCTTGTTGATGCGGTTCGTCGAGCAGGGGAACTCGGTCAACCTGTGGAGACAGCATTTAGCAGGAAAAGAAGTTTCCGCAACAAGATCAAGAAGAGGGCTGCTAACCAAGTCAGAGATTCAGCTATTATTAAAGAGAGTGCTCTGGCTTGA 1746 0.4444 MILCRSALVFHLHVPSIRSQVFSQFKHTYSYLCTSSSPSLVNVRFLSLTHPRQRQFRAFGSAVAAVAGTKGRDTFLAEENVSWNSLGLSDTISRALSSIGLDRPSLVQASSIPSVLSGKDVVIAAETGSGKTHSYLVPLIDKLRDAHHNSESIVHNQKKSLPHNVLLVLCPNVQLCEQVVQMASSLCGDNGEPIVSVAAICGRQGWPIHAPDVIVMTPVALLNYVDQSRSRRMEFMHGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSRSKESVAELPMELESTLPSHSALYGEEKQPTEDTILEDGDDDTEHMVDINNEADSIKRRDWRRVRKNYERSKQYIFVAATLPVNGKKTAGAILKHMFPDAEWVSGNYLHCHNPRLEQRWIEVTVDTQVDELIKAVRQGFTKDLDSAGGICRTMVFANTVEAVEAVAKILLRSGIECLRYHKDRTLEERAKTLVEFQEKGGVLVCTDAAARGVDIPNISHVIQADFAGSAVDFLHRVGRTARAGQFGLVTSTYTESNRELVDAVRRAGELGQPVETAFSRKRSFRNKIKKRAANQVRDSAIIKESALA 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1255 581 Gene3D - 52 371 IPR027417 -
Dere13g1255 581 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 373 IPR014001 -
Dere13g1255 581 CDD DEADc 92 273 - -
Dere13g1255 581 CDD SF2_C_DEAD 389 524 - -
Dere13g1255 581 Pfam Helicase conserved C-terminal domain 425 517 IPR001650 -
Dere13g1255 581 Gene3D - 391 580 IPR027417 -
Dere13g1255 581 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 109 IPR014014 GO:0003724
Dere13g1255 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 529 IPR027417 -
Dere13g1255 581 Pfam DEAD/DEAH box helicase 107 271 IPR011545 GO:0003676|GO:0005524
Dere13g1255 581 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 565 IPR001650 -
Dere13g1255 581 SMART helicmild6 437 517 IPR001650 -
Dere13g1255 581 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 92 553 - -
Dere13g1255 581 SMART ultradead3 100 392 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1255 Dere-ChrDere13 17307090 17313536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1255 332 543 Eukaryotic Initiation Factors Gene Family AT5G11200 26.639 1.41e-12 68.2