Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1242 ATGGAAACATATTTCCCGGGAAAACAATTTCCACAGTTCTCACATCTTCATCTATCACAGGCCAGCAACACACTCTCACAGCAAAAGCATTCCGGCGACTTCTCCGGTCACGTTCTGGCAACCGTTCCACCGAAGCCATGGGAAGAGAATGAGGAGCCGCCGGCGATCATCATGTCGGTTTCCTGCACTGACTACTTCCCTGATTCCGAACTTCTCTGCGGCGAAGACTCCTCCGGAATTTTATCCGGAGAGTCGCCGGAATGCTCCTCCGACCTCGATTCCTGTCCGACGTCCACGGAGGAGTCGATTGCCGGATTTATCGAACACGAGCACAGCTTCGTCCCCGGAGTCGATTACCTGTCCAGGTTTCAATCTCATTCGCTTGACGCCTCCGCCAGAGAGGAATCTGTTGCATGGATTCTCAAGGTACGAGCATACTATGGCTTTCAGCCGCTGACGGTGTATCTTTCCGTCAACTACATGGATCGGTTTTTGGATTCTCGGCGGCTTCCGCAAACCAATGGGTGGCCGCTGCAACTTCTATCTGTTGCTTGTTTGTCTTTAGCAGCGAAGATGGAGGAACCTTTAGTTCCGCCCCTTCTGGATCTTCAGGTAGAAGGTGCCAAATATATATTTGAGCCGAAAACAATTCGTAGGATGGAATTACTTGTTCTTGGTGCTTTGGATTGGAGACTAAGATCAGTCACGCCGTTCAGTTTCCTCAGTTTCTTTGCGTACAAGCTCGATTCAACTGGAACTTTTACTGGCTTCCTCATTTCAAGAGCTACAGAAATCATCTTATCTAATATCCAAGAGGCTAGTTTTCTTGCGTACTGGCCTTCATGCATTGCTGCCGCGTCCATACTTTGTGCAGCGAATGAAATTCCTAATTGGTCTCTCCTCAAGCCTGAGCATGCTGAGTCATGGTGTGAGGGGCTTAGAAAAGAAAAGATTATCGGTTGCTACCAGTTGATGCATGAACTTGCCATTAACAATAACCAGAGGAAGCCCCCTAAAGTGTTGCCACAGCTTCGAGTAACAACTCGGCTCGGAATAAGGTCAAGTATGTCATCATACTCCCCCTCTTCCTCTTCTTCCTCCTCCTCATCACCTTATAAAAGGAGGAAATTAAATAACTGCTCGTGGGTAGATGATGACAAAGGAAACTCCGAGTGA 1176 0.4821 METYFPGKQFPQFSHLHLSQASNTLSQQKHSGDFSGHVLATVPPKPWEENEEPPAIIMSVSCTDYFPDSELLCGEDSSGILSGESPECSSDLDSCPTSTEESIAGFIEHEHSFVPGVDYLSRFQSHSLDASAREESVAWILKVRAYYGFQPLTVYLSVNYMDRFLDSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPPLLDLQVEGAKYIFEPKTIRRMELLVLGALDWRLRSVTPFSFLSFFAYKLDSTGTFTGFLISRATEIILSNIQEASFLAYWPSCIAAASILCAANEIPNWSLLKPEHAESWCEGLRKEKIIGCYQLMHELAINNNQRKPPKVLPQLRVTTRLGIRSSMSSYSPSSSSSSSSSPYKRRKLNNCSWVDDDKGNSE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1242 391 SMART cyclin_7 138 226 IPR013763 -
Dere13g1242 391 Pfam Cyclin, N-terminal domain 105 232 IPR006671 -
Dere13g1242 391 SUPERFAMILY Cyclin-like 91 232 IPR036915 -
Dere13g1242 391 CDD CYCLIN_AtCycD-like_rpt2 235 325 - -
Dere13g1242 391 ProSitePatterns Cyclins signature. 133 164 IPR006671 -
Dere13g1242 391 FunFam D2/4-type cyclin 116 233 - -
Dere13g1242 391 Pfam Cyclin, C-terminal domain 235 344 IPR004367 -
Dere13g1242 391 SUPERFAMILY Cyclin-like 217 338 IPR036915 -
Dere13g1242 391 CDD CYCLIN_AtCycD-like_rpt1 132 230 - -
Dere13g1242 391 PANTHER CYCLINS 95 333 IPR039361 -
Dere13g1242 391 MobiDBLite consensus disorder prediction 353 391 - -
Dere13g1242 391 Gene3D - 116 233 - -
Dere13g1242 391 Gene3D - 107 296 - -
Dere13g1242 391 MobiDBLite consensus disorder prediction 353 376 - -
Dere13g1242 391 SMART Cyclin_C_2 235 372 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1242 Dere-ChrDere13 17180462 17183161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1242 58 390 Core Cell Cycle Gene Families AT1G70210 64.985 1.15e-141 405