Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1235 ATGAAGCAGCAGTTTCCATTTCTCTATCAAACTAAGCACACCCCACCACTTCTTCCTACCACCCATAGAAAGAGAACAACTGAAGGTAGAGCCATCATGCCATTTGGGTTGGTCTCAGCCTGGAGCAAGCGCCGCAGAAGCAAGTCTCAGGACCACATAGACCCCTGGATTTACAGACCTGTGGAGTTTTGGCAACTTGAAGATCAAGCAACAGGGCCCACAAAAAGGCGGCACGCTTCATCGGTTTACACGATTAAGGAGATGGAAGAAGCAACTGGTTCATTCAGTGATGATAATCTACTTGGAAAAGGAGGATTTGGCAGAGTCTACCGGGGCACTTTGCGGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGATCTGCCAGCAATTAAAGAAGCAGAAGGAGAGCGTGAGTTCCGTGTTGAAGTTGACATCTTAAGTAGAATTGACCACCCAAATCTTGTTTCTTTAATAGGCTACTGTGCTGATGGAAAGCACCGGTTCCTAGTATACGAATATATGCATAATGGGAACCTGCAAGATCATTTGAATGGAAATGGGAAAAGAAAAATGGATTGGCCTCAAAGACTCAAAGTGGCACTGGGAGCAGCACAAGGTCTTGCATATCTCCATTCAAGTTCTGCTGTTGGAATTCCTATTGTTCACAGGGATTTCAAATCTACCAATATTCTCTTAAATGTCAATTTTGAAGCAAAGATATCAGATTTTGGGCTAGCCAAGTTAATGCCAGAAGGGCAGGAGACACATGTGACTGCCAGTGTGCTTGGTACCTTTGGCTACTTTGATCCTGAGTACACATCGACTGGAAAACTCACGTTACAAAGTGATGTTTACGCTTTTGGTGTTGTTCTTCTTGAGCTTTTGACTGGACGTCAAGCTGTAGATTTAAACCAAGGCCCAAATGATCAAAACCTTGTATCACAGGTGAGGAACATACTGAATGACCGCAAGAAGCTTCGTAAGGTGATAGACCCAGAAATGGCTCGAAATTCTTACACCATTGAGTCTTTATCCATGTTTGCCAATCTGGCATCACGATGTATCCGTACTGACAGTAGTGAGAGGCCTTCTATGGCAGAATGTGTAAAAGAGCTGCAAATGATTATCTATACGAATTCAAAAGGCCTGGCAATGATTATGCATAGTTTGAGAATGATCTAA 1182 0.434 MKQQFPFLYQTKHTPPLLPTTHRKRTTEGRAIMPFGLVSAWSKRRRSKSQDHIDPWIYRPVEFWQLEDQATGPTKRRHASSVYTIKEMEEATGSFSDDNLLGKGGFGRVYRGTLRSGEVVAIKKMDLPAIKEAEGEREFRVEVDILSRIDHPNLVSLIGYCADGKHRFLVYEYMHNGNLQDHLNGNGKRKMDWPQRLKVALGAAQGLAYLHSSSAVGIPIVHRDFKSTNILLNVNFEAKISDFGLAKLMPEGQETHVTASVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRQAVDLNQGPNDQNLVSQVRNILNDRKKLRKVIDPEMARNSYTIESLSMFANLASRCIRTDSSERPSMAECVKELQMIIYTNSKGLAMIMHSLRMI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1235 393 Pfam Protein kinase domain 96 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1235 393 FunFam serine/threonine-protein kinase PBS1-like 64 173 - -
Dere13g1235 393 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Dere13g1235 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Dere13g1235 393 PANTHER OS01G0750732 PROTEIN 69 377 - -
Dere13g1235 393 Gene3D Phosphorylase Kinase; domain 1 65 173 - -
Dere13g1235 393 SUPERFAMILY Protein kinase-like (PK-like) 82 380 IPR011009 -
Dere13g1235 393 CDD STKc_IRAK 101 373 - -
Dere13g1235 393 ProSiteProfiles Protein kinase domain profile. 95 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1235 393 Gene3D Transferase(Phosphotransferase) domain 1 174 387 - -
Dere13g1235 393 FunFam receptor-like serine/threonine-protein kinase NCRK 174 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1235 Dere-ChrDere13 17104525 17108880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1235 82 372 Receptor kinase-like Gene Family AT3G58690 46.959 7.35e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Dere13g1235 Pkinase 1.6e-51 CL0016