Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1224 ATGCCATATTCTACAATGTCTTGGGTTCACTATCAAATTCTGCAGAACAATGGTGATATGACTAGCCAGCCTACTCTTTCCCCTTCTTCTTCTTCCTCATCTTCTCCATTGCCTTACATTTCAAACTACCAGAAACAATTAAGCCCGCCTCCGGCTTCTTCGTCCTCTGGGAACAAAATAAGTCCGGCAGTTCTTTTTATCATAGTTGTTCTAGCTGTTGTGTTTTTCATTTCGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCATAGGTCGTCTTCATCAATTTCTCAATCCAATAGATACCCGGATATGTCTGAATCGGATGCTTACCAGAGGCAGTTACAGCAGCTCTTTCATCTTCATGATTCTGGACTGGATCAGGCTTTTATAGATGCTCTTCCTGTCTTCTTTTATAAGGAGATAATAGGCTTAAAAGAGCCATTTGATTGTGCCGTTTGCCTCTGTGAATTCTCAGAACATGACAAGCTGAGGTTACTGCCCATGTGTAACCATGCTTTTCACATTGACTGTATAGACACATGGTTGTTGTCTAATTCAACTTGTCCTCTCTGTAGAGGGACTCTGTATGCACCAGGGTTTGCCTTTGAAAACCCAGCTTTTGACTTTGAAGATCCAAGGGAAGAAGATGGGGTTTCAGCAGGCAGTGGTGGAGGTGGGGCTACTTCTGTTCACAAACCTGCAGAAAATCACATTATGTGTGGGAAAAGGGTGTTCTCTGTGAGACTTGGAAAATTTAGAAGCTCAAACACTAGAGAAGGAATAGAAAGAGGCGAAGGAGAGAGCAGTTGTAGTAGTAGTAATTTGGATGTAAGGAGATGCTATTCAATGGGCTCTTTCCAGTACGTGGTTGCTGATTCAGACTTAAGAGTAGCCTTGTGCCCCAATAGAGGTGATGGGGGTAGTGGCAGTATGAGGCAGTTGAAAGTTCGAGCAGCTCAAAATGGGAATAATCCTTCCTCTGATGCAGACTTTGAGGGCAAAAAACTTAACATTGCAAGGAAAGGGGAAAGCTTTTCTGTTTCCAAGATCTGGCTATGGTCTAAGAAGGATAAATTACCAAGTTCTTCAGTAGCCAACATGGCAAATTCTACTCCTGTCACTGCAAATTTGCCTTGGCTGAATAGAACTCGAGTGCATAAAACATTAAGTGAGCTGTAA 1185 0.4245 MPYSTMSWVHYQILQNNGDMTSQPTLSPSSSSSSSPLPYISNYQKQLSPPPASSSSGNKISPAVLFIIVVLAVVFFISGLLHLLVRFLIKHRSSSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFSEHDKLRLLPMCNHAFHIDCIDTWLLSNSTCPLCRGTLYAPGFAFENPAFDFEDPREEDGVSAGSGGGGATSVHKPAENHIMCGKRVFSVRLGKFRSSNTREGIERGEGESSCSSSNLDVRRCYSMGSFQYVVADSDLRVALCPNRGDGGSGSMRQLKVRAAQNGNNPSSDADFEGKKLNIARKGESFSVSKIWLWSKKDKLPSSSVANMANSTPVTANLPWLNRTRVHKTLSEL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1224 394 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Dere13g1224 394 FunFam RING-H2 finger protein ATL46 114 199 - -
Dere13g1224 394 CDD RING-H2_EL5-like 151 194 - -
Dere13g1224 394 SMART ring_2 152 193 IPR001841 -
Dere13g1224 394 MobiDBLite consensus disorder prediction 214 234 - -
Dere13g1224 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 54 353 - -
Dere13g1224 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 199 IPR013083 -
Dere13g1224 394 Pfam Ring finger domain 151 194 IPR001841 -
Dere13g1224 394 SUPERFAMILY RING/U-box 131 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1224 Dere-ChrDere13 16951069 16952393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1224 54 368 C3H Transcription Factor Family AT2G18650 38.710 3.84e-58 193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1224 13 16951069 16952393 Dere13g1224 13 16951069 16952393 ECH