Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1219 ATGTCACGCCTTGGAGGTGGTTGGCGCGTTGCGTGGACTCGCTGGGACGAGGAAAATGGTCAGGGCACCGGGAATATACGTCCCGCTTTATCCAATTCTGAACGCGTTCAGAAAATAAGAGCAGCCTCCATTTTCTTCAGCCTCTTTATCTCCCCTATCACTTTCTATATTCCTATTGAGGCTGTCCCGAACCCCAACGTCGCTTGCCACCAAGTTTTCTTGGCAACCAAGCAGTTTTCTGGTTTGCGATCTTTAAGATTTGAAACCCGTTCTTGTTTTTGTTTAGTCTGTGGTTTTACGGAGGCTAGAGGGGAAATAAATGCTGAGAAGAGAGCACTAGTAGCTTGTAGAATAAATATCTTCTGGACAGCAATTATGATGAATTTTCTCGCAATTTCATGTGCCATAGATGTAGCATTCCTACCAGAATTGTTGATGACCACTGACCTCAAATCTTTTTCATCCATTAAGATTCGGATATTAAAGAAAAGTTACCCACTACCAGCCATGGCATCAAGATCATATACTAATTTCCTAGACTTAGCTGGTGGAGACTTACTGGATAGTCCTCACACTCCAAGAACACTTCCAAGGGTCGTAACAGTTCCCGGAATTATTTCTGACCTGGATCGTCATGGGTGTAATGATGGGGATTCAGATGTTAGCTCTTCTGGGTGTCGAGAGCGGAAAATTATTGTGGCGAACATGCTGCCATTGCAGGCTAAAAGGGACACACAAGCTTCTAAATGGTGCTTCAGTTTGGATGAGGATTCAATTTTGTTACAACTAAAAGATGGTTTTTCTTCTGATACTGAGGTAATCTATGTGGGGTCCCTCAAGGTTGAAATAGAGCCAAGTGAGCAGGAAGAAGTTGCTCAGAAATTAATGGAAGATTTTAATTGTGTGCCTACTTTTCTACCTCATGATCTCCAGAAAAGGTTTTATCTTGGCTTTTGTAAGCAGCAGCTGTGGCCTCTCTTTCATTACATGCTACCTATGTGCCCAGATCATGGTGACCGCTTTGACCGCTTGCTTTGGCAGGCTTATGTTTCGGCAAACAAAATATTTGCAGACAAGGTTATGGAAATAATTAATCCTGATGATGATTTTGTCTGGGTTCATGACTATCACTTGATGGTGTTCCCTACTTTTCTAAGGAAGCGATATAATCGCGTTAAACTAGGATTCTTCCTTCACAGTCCTTTCCCTTCATCTGAAATATACCGAACTTTGCCAGTGCGAGATGAAATTCTCAGGGGATTGTTGAATTCTGATTTAATTGGTTTTCATACATTTGATTATGCTCGCCACTTCCTCTCTTGCTGCAGTAGAATGCTGGGTCTGGACTATGAGTCTAAGCGGGGACATATAGGACTTGATTACTTTGGCCGCACTATATTTATCAAGATTTTGCCTGTAGGCATTCACGTGGGTAGGCTTGAATCTGTATTAAATCTTTCTTCTACATCTGCTGGAATGAAAGAAATCCAGGAAGAGTTTAAGGGTAGAAAAGTGATTCTTGGTGTTGATGACATGGATATTTTTAAGGGCATCAGTCTGAAACTTCTTGCTGTAGAGCAGCTGCTGCTGCAGCATCCAGATTTGCGGGGCAAAATTGTACTAGTTCAAATTGTGAATCCTGCAAGGGGTTCTGGGAAGGATGTTCAGGAAGCAAAGAAGGAAACATATTTAATTGCCCAGAGGATCAATGATACTTATGGTTCAGACCATTATCAGCCAGTTATTCTCATTGATCGCCCTGTTCCAAGTTTTGAGAAGAGTGCCTATTATGCTGTAGCAGAATGTTGCATTGTAAATGCTGTGAGGGATGGTATGAACTTAGTCCCATACAAATATGTTGTCTGCAGACAAGGAACTTCACAACTGGACGACGCGTTGGGTAAAAAAAGTGATTCTCCTCGTACAAGCATGCTTGTTGTGTCTGAGTTTATTGGTTGTTCACCTTCCTTAAGTGGAGCAATTAGGGTTAACCCCTGGGATATAGATGCTGTCGCTGAAGCTTTGAATTTGGCAATTACAATGCATGATTCAGAGAAGAAATTGCGGCATGAGAAACACTATCGTTATGTCAGCTCTCATGATGTGGCTTATTGGGCACGCAGCTTTATGCAGGATTTGGAGAGGGCATGCAAAGATCATTACACCAAAAGGTGCTGGGGAATAGGTCTGGGCCTAGGGTTCAGAGTTGTTTCTCTTTCTCCTGGTTTTAGAAAGTTGTCCATTGATCACATTGTTTCAGCATACAAGAGAGCCAATAGAAGGGCCATCTTTCTTGATTATGATGGTACTGTTGTACCAGAATCTTCCATTAATAAAATCCCCAGCCCCGAAGTCATATCTTTCCTGAATACGTTATGTAATGATCCCAAGAACACCGTGTTCATTGTTAGTGGCAGGGGAAGAGATTCTTTGAGTGATTGGTTTGCTTCATGCAAATTGCTGGGACTTGCTGCAGAACACGGGTACTTCTTAAGGTGGAGTAGAGACTCCAAATGGGAAACGAGTCACTTGTCTGCTGACCTTGATTGGAAAAATATTGTGGAACCTGTAATGAGGTTATATATAGAGGCAACTGATGGATCTAGTATTGAAATTAAGGAAAGTGCATTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCTTGCCAAGCCAAAGAATTGTTAGATCACCTGGAAAGTGTGCTTGCTAATGAACCAGCGGTTGTAGAGAGGGGCCAGCATATTGTTGAAGCTAAGCCACAGGGAATAAGCAAGGGTTTGGTAGCTGAAAAGGTTCTCTTAACTATGGTCAATGAAGGGAATCCGCCGGATTTTGTAATGTGCATTGGGGATGATAGGTCGGATGAAGACATGTTTGAGAGCATAGCAAGGACAGTCTCCTCTCCATCATTGCCAGTAGCACCAGAAATCTTTGCCTGCACTGTTGGCCGAAAGCCTAGCAAGGCCAAATATTATCTTGATGATGCTGCTGATGTTGTGAAATTGCTTAAGGCCCTTGGTACTGCATCAAATCCAAAGCCGAGGCATTTAGCCCATTTCCAGGTTTCGTTTGAGAGCACAGTTTGA 3093 0.4271 MSRLGGGWRVAWTRWDEENGQGTGNIRPALSNSERVQKIRAASIFFSLFISPITFYIPIEAVPNPNVACHQVFLATKQFSGLRSLRFETRSCFCLVCGFTEARGEINAEKRALVACRINIFWTAIMMNFLAISCAIDVAFLPELLMTTDLKSFSSIKIRILKKSYPLPAMASRSYTNFLDLAGGDLLDSPHTPRTLPRVVTVPGIISDLDRHGCNDGDSDVSSSGCRERKIIVANMLPLQAKRDTQASKWCFSLDEDSILLQLKDGFSSDTEVIYVGSLKVEIEPSEQEEVAQKLMEDFNCVPTFLPHDLQKRFYLGFCKQQLWPLFHYMLPMCPDHGDRFDRLLWQAYVSANKIFADKVMEIINPDDDFVWVHDYHLMVFPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHVGRLESVLNLSSTSAGMKEIQEEFKGRKVILGVDDMDIFKGISLKLLAVEQLLLQHPDLRGKIVLVQIVNPARGSGKDVQEAKKETYLIAQRINDTYGSDHYQPVILIDRPVPSFEKSAYYAVAECCIVNAVRDGMNLVPYKYVVCRQGTSQLDDALGKKSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVAEALNLAITMHDSEKKLRHEKHYRYVSSHDVAYWARSFMQDLERACKDHYTKRCWGIGLGLGFRVVSLSPGFRKLSIDHIVSAYKRANRRAIFLDYDGTVVPESSINKIPSPEVISFLNTLCNDPKNTVFIVSGRGRDSLSDWFASCKLLGLAAEHGYFLRWSRDSKWETSHLSADLDWKNIVEPVMRLYIEATDGSSIEIKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPAVVERGQHIVEAKPQGISKGLVAEKVLLTMVNEGNPPDFVMCIGDDRSDEDMFESIARTVSSPSLPVAPEIFACTVGRKPSKAKYYLDDAADVVKLLKALGTASNPKPRHLAHFQVSFESTV 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1219 1030 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 222 481 - -
Dere13g1219 1030 FunFam Alpha,alpha-trehalose-phosphate synthase 483 698 - -
Dere13g1219 1030 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 890 1021 - -
Dere13g1219 1030 CDD GT20_TPS 229 714 IPR001830 GO:0003824|GO:0005992
Dere13g1219 1030 Gene3D Glycogen Phosphorylase B; 482 698 - -
Dere13g1219 1030 Gene3D Glycogen Phosphorylase B; 223 481 - -
Dere13g1219 1030 NCBIfam trehalose-phosphatase 758 1008 IPR003337 GO:0003824|GO:0005992
Dere13g1219 1030 Gene3D - 760 877 IPR023214 -
Dere13g1219 1030 Gene3D - 890 1022 IPR023214 -
Dere13g1219 1030 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 229 718 - -
Dere13g1219 1030 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 197 1009 IPR001830 GO:0003824|GO:0005992
Dere13g1219 1030 CDD HAD_TPP 762 1003 - -
Dere13g1219 1030 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 760 877 - -
Dere13g1219 1030 NCBIfam HAD-IIB family hydrolase 762 968 IPR006379 -
Dere13g1219 1030 FunFam Trehalose-6-phosphate synthase 2 844 923 - -
Dere13g1219 1030 SUPERFAMILY HAD-like 761 1009 IPR036412 -
Dere13g1219 1030 Pfam Glycosyltransferase family 20 229 714 IPR001830 GO:0003824|GO:0005992
Dere13g1219 1030 Pfam Trehalose-phosphatase 764 997 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1219 Dere-ChrDere13 16900267 16910134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1219 170 1030 Trehalose Biosynthesis Gene Families AT1G23870 74.856 0.0 1377