Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1209 ATGGCTTCTTCGTTGCGGATCTCACGGCTGCTCTCTCGCTCTTTCTCTTCTGCTTCTTTGTTTTCTCGAGGTACTGCCTGTTCATCACTTCCATTTTCGTTTCGGTTTGTTATCACTGGACTCGACGATCTGATCGTTTTGTTTGTGGGGTTTCTGAGAAAATGTCAAAAACCAAATGATGATGTGACCTCTTGGCTCTTTTGTGGGAATGGTTGCCTGAGTAGAGGGCTGAGTAGATACAGTACTACTGCTGCTGCTGCTATTGAAGAACCAATTAAGCCAAAAGTTCAAGTAGAACAAACTCAGCTCCTAATCGATGGGAAATTCGTGGATGCCGCTTCTGGCAAAACTTTTCCGACGTTGGACCCCAGGACAGGGGAAGTAATTGCATATGTTGCCGAGGGTGACTCTGAAGATGTAGATCGAGCAGTTTTAGCTGCACGCAAGGCATTTGATGAAGGGCCTTGGCCAAAAATGACAGCCTATGAAAGGCAAAAGATATTGTTGCGCGCTGCTGATCTGCTGGAGAAGCATAATGATGAGCTTGCGACACTCGAGACTTGGGATAACGGGAAGCCATATGCACAAGCAGCTCAAATCGAAGTTCCAATGCTGGTTCGTCTAATTCGATATTATGCTGGTTGGGCAGATAAGATTCACGGTCTCACAGTTCCTGCTGATGGTCCACATCATGTGCAAACATTGCATGAACCAATCGGTGTTGCTGGTCAGATCATTCCATGGAACTTCCCTCTACTTATGTTTGGATGGAAGATTGGGCCTGCTTTAGCATGTGGCAACACTATTGTTATGAAAACAGCTGAACAAACGCCATTATCTGCTTTATATGCATCAAAGCTATTCCATGAGGCTGGGCTTCCTCCTGGTGTTTTAAATATTGTATCTGGCTTTGGTCCAACTGCTGGTGCTGCTGTTGCTAGTCACATGGATATTGATAAGCTTGCTTTTACTGGCTCAACTGATACTGGAAAAATAGTCCTCGAACTGGCAGCAAAAAGTAATCTCAAGGCCGTAACTTTGGAGCTTGGTGGGAAATCCCCCTTTATTGTATGTGAAGATGCTGATATAGATCAAGCCGTAGAGCAAGCACACTTTGCATTATTCTTTAATCAGGGACAATGCTGTTGTGCTGGATCTCGTACATTTGTACATGAAAGTATATATGATGAGTTTGTTGAAAAAGCAAAGGCACGTGCCTTAAAACGTTCTGTTGGTGATCCTTTCAAGGCGGGAACAGAGCAAGGTCCTCAGATTGATTCAGAACAATTTGAGAAGATACTGAAGTATATAAGATCTGGTGTTGAAAGCGGAGCTACCCTTGAAACTGGAGGAGAGAGGCATGGAGAAAAAGGCTTCTATGTCAAGCCCACTGTGTTCACAAATGTTCAGGACAATATGCTGATTGCGAAGGATGAGATATTTGGCCCTGTGCAATCCATATTGAAATTTAAGGACATTGATGAGGTGATTCGAAGAGCGAACAACACACGCTATGGCCTTGCAGCTGGGGTCTTTACAAAGAACATTGACACTGCAAACACCCTGACTCGAGCATTGCGAGCTGGGACAGTGTGGGTGAATTGCTTTGATATATTTGATGCTGGAATTCCGTTTGGTGGGTACAAAATGAGTGGGCAAGGCAGGGAAAAAGGGATTGACAGTCTTAAAAACTACTTGCAAGTGAAGGCTGTCGTTACTCCATTGAAGAACCCAGCATGGCTTTGA 1746 0.4444 MASSLRISRLLSRSFSSASLFSRGTACSSLPFSFRFVITGLDDLIVLFVGFLRKCQKPNDDVTSWLFCGNGCLSRGLSRYSTTAAAAIEEPIKPKVQVEQTQLLIDGKFVDAASGKTFPTLDPRTGEVIAYVAEGDSEDVDRAVLAARKAFDEGPWPKMTAYERQKILLRAADLLEKHNDELATLETWDNGKPYAQAAQIEVPMLVRLIRYYAGWADKIHGLTVPADGPHHVQTLHEPIGVAGQIIPWNFPLLMFGWKIGPALACGNTIVMKTAEQTPLSALYASKLFHEAGLPPGVLNIVSGFGPTAGAAVASHMDIDKLAFTGSTDTGKIVLELAAKSNLKAVTLELGGKSPFIVCEDADIDQAVEQAHFALFFNQGQCCCAGSRTFVHESIYDEFVEKAKARALKRSVGDPFKAGTEQGPQIDSEQFEKILKYIRSGVESGATLETGGERHGEKGFYVKPTVFTNVQDNMLIAKDEIFGPVQSILKFKDIDEVIRRANNTRYGLAAGVFTKNIDTANTLTRALRAGTVWVNCFDIFDAGIPFGGYKMSGQGREKGIDSLKNYLQVKAVVTPLKNPAWL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1209 581 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 347 354 IPR029510 GO:0016491
Dere13g1209 581 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 105 364 - -
Dere13g1209 581 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 353 542 IPR016163 GO:0016620
Dere13g1209 581 CDD ALDH_F2BC 98 573 - -
Dere13g1209 581 Pfam Aldehyde dehydrogenase family 109 571 IPR015590 GO:0016491
Dere13g1209 581 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 375 386 IPR016160 GO:0016491
Dere13g1209 581 FunFam Aldehyde dehydrogenase, putative 543 569 - -
Dere13g1209 581 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 115 571 IPR016162 GO:0016491
Dere13g1209 581 SUPERFAMILY ALDH-like 96 575 IPR016161 GO:0016491
Dere13g1209 581 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 86 571 - -
Dere13g1209 581 FunFam Mitochondrial aldehyde dehydrogenase 2 353 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1209 Dere-ChrDere13 16812086 16816593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1209 69 581 Aldehyde Dehydrogenase Gene Family AT3G48000 77.583 0.0 858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere13g1209 13 16812086 16816593 Dere13g1209 13 16812086 16816593 ECH