Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1198 ATGTCTTCGCCACCTTCTGAGCACATTGTTCGCCACCGAGAAGGAAGAGATAATGCTGAACAACCACCTCTGTCTGGGACTGCTTTTACAGGGGAAAACCAAGAAGCTTCCGGCCTCTGTCTTGCTCCCCTACTGTTGAGTTTCAGCTTCTTTTGTTGGTGGAGAAACCAGCGATGCAGAAGCACCTTTCTCCTCCCCCTCGCTTTCATAACGATCCACAAAGACCCACGCATGCGTAAAGCTCAAAACTTGCATGTAATGAACATGACGAAAGCAGGCATGAATGAGCACAAGAAGGGACTTTGGACGGAGGAGGAAGACAGGATTTTGATAAAATACATCAGAGTTCATGGAAGAAGCCACTGGAAGCGCATTTCCAAAGTCACTGGGTTAATGAGGAGTGGGAAGAGCTGCAGGTTAAGGTGGGTGAACTACCTCAGCCCAAATGTGAAATATGGCAGTTTCTCTGAGGAAGAAGACGATCTCATCATTAGACTTCATAATCTCCTGGGAAACAGGTGGTCTCTAATAGCAGAGAGGGTCCCAGGAAGAACAGACAACCAAGTAAAGAACCACTGGTGCACTCATTTGTGCAAGAAGGCTGGTATCAGAAAGCAAACTCGAAAAGTTAGAGACAAGGTATCCTCAAAAACACCAAAAGCTCCGGACATGGAAGGGACTCAAAATGTGGATATGACTTTGAATTCCATGCCTATGAATCCTCTCACTCGCAACAGTTAA 741 0.4629 MSSPPSEHIVRHREGRDNAEQPPLSGTAFTGENQEASGLCLAPLLLSFSFFCWWRNQRCRSTFLLPLAFITIHKDPRMRKAQNLHVMNMTKAGMNEHKKGLWTEEEDRILIKYIRVHGRSHWKRISKVTGLMRSGKSCRLRWVNYLSPNVKYGSFSEEEDDLIIRLHNLLGNRWSLIAERVPGRTDNQVKNHWCTHLCKKAGIRKQTRKVRDKVSSKTPKAPDMEGTQNVDMTLNSMPMNPLTRNS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1198 246 Gene3D - 153 225 - -
Dere13g1198 246 CDD SANT 154 197 IPR001005 -
Dere13g1198 246 SMART sant 151 199 IPR001005 -
Dere13g1198 246 SMART sant 98 148 IPR001005 -
Dere13g1198 246 MobiDBLite consensus disorder prediction 1 29 - -
Dere13g1198 246 MobiDBLite consensus disorder prediction 228 246 - -
Dere13g1198 246 Gene3D - 90 152 - -
Dere13g1198 246 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 92 219 - -
Dere13g1198 246 MobiDBLite consensus disorder prediction 205 246 - -
Dere13g1198 246 Pfam Myb-like DNA-binding domain 99 146 IPR001005 -
Dere13g1198 246 Pfam Myb-like DNA-binding domain 153 197 IPR001005 -
Dere13g1198 246 ProSiteProfiles Myb-like domain profile. 147 197 IPR001005 -
Dere13g1198 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 147 201 IPR017930 -
Dere13g1198 246 SUPERFAMILY Homeodomain-like 97 193 IPR009057 -
Dere13g1198 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 94 146 IPR017930 -
Dere13g1198 246 ProSiteProfiles Myb-like domain profile. 94 146 IPR001005 -
Dere13g1198 246 FunFam MYB-related transcription factor 98 151 - -
Dere13g1198 246 CDD SANT 102 146 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1198 Dere-ChrDere13 16617595 16621886 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1198 87 219 MYB Transcription Factor Family AT5G40330 63.433 4.63e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere13g1198 Myb_DNA-binding 8.8e-15 CL0123