Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1196 ATGACGAAAGCAGGCATGAATGAGTACAAGAAGGGGCATTGGACGGAGGAGGAAGACAGGATTTTGATAGAATACATCAGGCTTCATGGAAGAAGCCACTGGAACCGCATTTCCAAAGTCACTGGGTTAATGAGGAGAGGGAAGAGCTGCAGGTTAAGGTGGCTGAACTACCTCAGCCCAAATGTTAAACATGGCAGTTTCTCTGAGGAAGAAGACGATCTCATCATTAGACTTCATAATCTCCTGGGAAACAGGTGGTCTCTAATAGCAGGGAGGGTCCCAGGAAGAACAGACAACCAAGTAAAGAACCACTGGAACACTCATTTGTGCAAGAAGCTTGGTATCAGAAAGCAAACTCGAAAAGTTAGAGACAAGGTATCCTCAAAAACACCAAAAGCTCCGGACATGGAAGGGACTCAAAATGTGGATATGACTTTGAATTCTATGACTATGAATCCTCTCACTCGTAACAGTGAAGAGAAAGAAACTGAAATACATGGGCAAGGAAGCTGTTCGAATACTGGTACGGCAGCCATTGATGGTGCTCAACATTGGCCAGCAGGAACAAACAAAGAGCACTTTGACCGAACTTTCTTGTTTGATGATGATCGCAATTTTGTACTAGATAGTCCTCCTGGGTTAATGGAATTCTTTGAGGGATTTGGCATAATATAG 675 0.437 MTKAGMNEYKKGHWTEEEDRILIEYIRLHGRSHWNRISKVTGLMRRGKSCRLRWLNYLSPNVKHGSFSEEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNHWNTHLCKKLGIRKQTRKVRDKVSSKTPKAPDMEGTQNVDMTLNSMTMNPLTRNSEEKETEIHGQGSCSNTGTAAIDGAQHWPAGTNKEHFDRTFLFDDDRNFVLDSPPGLMEFFEGFGII 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1196 224 MobiDBLite consensus disorder prediction 120 140 - -
Dere13g1196 224 CDD SANT 14 58 IPR001005 -
Dere13g1196 224 Gene3D - 2 64 - -
Dere13g1196 224 Gene3D - 65 137 - -
Dere13g1196 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 58 IPR017930 -
Dere13g1196 224 FunFam Transcription factor WER 65 137 - -
Dere13g1196 224 SMART sant 63 111 IPR001005 -
Dere13g1196 224 SMART sant 10 60 IPR001005 -
Dere13g1196 224 FunFam Myb transcription factor 11 63 - -
Dere13g1196 224 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Dere13g1196 224 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Dere13g1196 224 Pfam Myb-like DNA-binding domain 65 109 IPR001005 -
Dere13g1196 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Dere13g1196 224 CDD SANT 66 109 IPR001005 -
Dere13g1196 224 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Dere13g1196 224 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Dere13g1196 224 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1196 Dere-ChrDere13 16551258 16554313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1196 1 223 MYB Transcription Factor Family AT5G40330 46.222 4.43e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere13g1196 Myb_DNA-binding 2.3e-15 CL0123