Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1186 ATGGAATCAGAACTGGCTCCTAGTAATGATACGGACAAGGATTCATCGTCTCCAAAAGGATCACCCCCTTCAGATTCTTCTCAGAATAATAAAAAGTCACCATCGGCAGCGCCCCCACTTACGTCAAAAAATGGTTCGAATAAGGACGAGGCTCCACCACCAAAGTCTAATGATTTAAATTCTTCATCGAAGGCACCGCCATCGCCGTCACAATCTACCCCGCCTCCGTCAATTTCATCGTCGCCTATAGTATCACCTTCCAATAAATCACCGCCATCATTGCCACCGCCACCGCCTTCTCCACCGCTAAGATCACCGCCTCCTCCACCACTACCACCACCACCTCATTCACCGCTAGCTCCACCACCTCATCCACCACCATCTTCACCGCCTCGTCCCCCGCCAACGCCAACTCCACCGCCACCACCACCACCATCGCCACCCCCACCCCCACCCCCGCCGCCACCGCCACCGCCGCCGCCACCATCCTCACCCTCAACCCCACCACCCTCTTCGCCACCACCTTCGCCATCGCCGTCATCGGGTAATGGTGATAATCCCTCTCCCAGTCCCCCTATACAGTCACCATCATCATCAAATTCCCAAGGCTCGTCTTCTTCTGGGAACTCTTCTAATATTTCATCCTCTCGCAATTCACCACCACCACCACCCCCACATGTCCATGGTGGCAATTCCCACCCTCAGACACACAACTCCCCGCCGCCACTGCCGCGGGTAGAACAATCAGGGTCAAGTCATCATTCGCCGCCCCACTCTCATACAACGCCAAGAAGTGCTGGTGGCGGTGACAGTAATCCAGGAAAGTATGTTGGTATTGCATTTGGGGGAGTCTGCGTCGTTGTCTTTATTGCTATATTTCTTTTGGTTGCGGTAATAAGGAAGAGAAAACGAGGGGCTGTCCACGATGTATCTTATATGCCACCTCATATGAAAGCAGGTGCAGAAGGGCATTACTACGGACAACAACCTCTACAAGAAGGCAACTACAAAAATGGGAGTCAAAGCGGAAGTATGCATCCTTTGGGAACATCAGATTCCGCACAGCCCAAGAGTGCTCAGACAGCTTTTAGCTATGAAAGCATTATGGAGATAACAAATGGATTTTCTAGTCAAAACATCATAGGAGAGGGAGGATTTGGATGCGTTTACAAGGGTTGGCTTACAGATGCAAGAGCAGTAGCAGTCAAGAAGCTAAAAGCGGGCAGCGGGCAAGGCGAACGGGAATTTAGGGCAGAAGTGGAGATCATCAGTCGTGTTCATCATCGACATTTGGTATCATTAGTTGGTTATTGCATATCTGAGCAGCAAAAGATTCTTTTGTATGAGTTTGTTCCCAATGGAACTCTCGATCATCACTTGCATGGAAAAGGAATGCCAGTGTTGGATTGGACCAAGAGGTTGAAGATAGCAATAGGTGCCGCAAAAGGCCTGGCATATTTACATGAGGACTGCAACCCAAAGATTATCCACAGAGATATTAAGTCAGCAAACATACTTTTGGATGATGCTTATGTGGCACAGGTTTCAGACTTTGGACTTGCCAGGTTATCTGATGATGCTAATACTCATGTATCAACGCGGGTCATGGGGACCTTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGAAAATTAACAGATAGATCAGATGTTTTCTCCTTCGGAGTTGTCCTCCTAGAGCTTTTAACTGGAAGGAAACCTGTTGACCAAACTCAGCCATTGGGAGAAGAAAGTTTGGTTGAGTGGGCTAGACCTCATCTTATTCATGCAGTTGAGACTGGTGACTTCAGCAGACTGATAGACCCAAGGCTTGAGCATCATTTTGTGGAGAGTGAAGTGCATAGAATGATTGAAGCAGCCGCAGCATGTGTTCGCCATTCTGCTCCAAAACGGCCCCGGATGCTTCAGGTTGTAAGAGCCTTAGATAGTGAAGGTGAACTAATTGACCTATCCAATGGAGTGAAATACGGTCAGAGCACCGTTTACAATTCTGGACAGTATGATGAAGAAATTATGAGATTTAGAATGATGAATGGTAGGAGCTTTGGCGAGTCTGAATTTGATATGTATAGTGGAGAATACAGTTCAAGAGAGTTCTCTGGATTCCGACATGCATGGGCGCAGGATAGTTCAAGTGGCGAGTCAGAGTCTCGAGCTTTCAACAGTAGGCATATCAAGGAATAA 2205 0.483 MESELAPSNDTDKDSSSPKGSPPSDSSQNNKKSPSAAPPLTSKNGSNKDEAPPPKSNDLNSSSKAPPSPSQSTPPPSISSSPIVSPSNKSPPSLPPPPPSPPLRSPPPPPLPPPPHSPLAPPPHPPPSSPPRPPPTPTPPPPPPPSPPPPPPPPPPPPPPPPSSPSTPPPSSPPPSPSPSSGNGDNPSPSPPIQSPSSSNSQGSSSSGNSSNISSSRNSPPPPPPHVHGGNSHPQTHNSPPPLPRVEQSGSSHHSPPHSHTTPRSAGGGDSNPGKYVGIAFGGVCVVVFIAIFLLVAVIRKRKRGAVHDVSYMPPHMKAGAEGHYYGQQPLQEGNYKNGSQSGSMHPLGTSDSAQPKSAQTAFSYESIMEITNGFSSQNIIGEGGFGCVYKGWLTDARAVAVKKLKAGSGQGEREFRAEVEIISRVHHRHLVSLVGYCISEQQKILLYEFVPNGTLDHHLHGKGMPVLDWTKRLKIAIGAAKGLAYLHEDCNPKIIHRDIKSANILLDDAYVAQVSDFGLARLSDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELLTGRKPVDQTQPLGEESLVEWARPHLIHAVETGDFSRLIDPRLEHHFVESEVHRMIEAAAACVRHSAPKRPRMLQVVRALDSEGELIDLSNGVKYGQSTVYNSGQYDEEIMRFRMMNGRSFGESEFDMYSGEYSSREFSGFRHAWAQDSSSGESESRAFNSRHIKE 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1186 734 MobiDBLite consensus disorder prediction 231 268 - -
Dere13g1186 734 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Dere13g1186 734 Pfam Protein tyrosine and serine/threonine kinase 378 647 IPR001245 GO:0004672|GO:0006468
Dere13g1186 734 Gene3D Phosphorylase Kinase; domain 1 340 450 - -
Dere13g1186 734 FunFam Proline-rich receptor-like protein kinase PERK8 348 450 - -
Dere13g1186 734 ProSitePatterns Protein kinases ATP-binding region signature. 381 404 IPR017441 GO:0005524
Dere13g1186 734 MobiDBLite consensus disorder prediction 714 734 - -
Dere13g1186 734 MobiDBLite consensus disorder prediction 195 216 - -
Dere13g1186 734 ProSiteProfiles Protein kinase domain profile. 375 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1186 734 SMART serkin_6 375 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1186 734 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 286 691 IPR047117 -
Dere13g1186 734 MobiDBLite consensus disorder prediction 1 270 - -
Dere13g1186 734 MobiDBLite consensus disorder prediction 331 356 - -
Dere13g1186 734 Gene3D Transferase(Phosphotransferase) domain 1 451 659 - -
Dere13g1186 734 FunFam proline-rich receptor-like protein kinase PERK8 451 663 - -
Dere13g1186 734 CDD STKc_IRAK 381 649 - -
Dere13g1186 734 MobiDBLite consensus disorder prediction 88 194 - -
Dere13g1186 734 MobiDBLite consensus disorder prediction 10 67 - -
Dere13g1186 734 SUPERFAMILY Protein kinase-like (PK-like) 353 648 IPR011009 -
Dere13g1186 734 MobiDBLite consensus disorder prediction 327 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1186 Dere-ChrDere13 16408741 16413452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1186 263 705 Trihelix Transcription Factor Family AT1G70460 62.366 0.0 594
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Dere13g1186 PK_Tyr_Ser-Thr 2.5e-48 CL0016