Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1167 ATGTCAACACCCAATTATCTTCTTGATCTTACAGAACAGATTTGTTACGTGCAATGTGAATTCTGCACCACCATTTTAATGGTCAGTGTCCCATGCAGCAGTTTATCAACGGTGGTGACAGTGAGGTGCGGACACTGCACAAGCCTCCTCTCTGTTAATATGATGAGAGCTTCTTTTGTGCCTTTTCACCTTTTAGCTTCCCTTCCTCATCTTGAGCAAGAAGAAGGTAGTCCAGAAGAAAATGCAGACAAGACTAGTTCTGATTGTGAGGAGGATGATGCAATTCCGATGAGCTATGCCATTAATAAACCCCCAGAGAAGAGACAAAGATCACCATCAGCTTATAATCGCTTCATCAAAGAAGAGATCAGAAGGCTAAAGGCTGAAAACCCTGACATGGCCCACAAAGAAGCTTTCAGCACAGCAGCAAAAAATGTAAACAATCAAAATTTTCTCAAAATACTAATACAAGATTGTGGGCCAGTTTCCCCCGAGCTCAATTTAAAGGAGATGAGGAGAACTGTAGTCAAACAGAGCAAGTTGTGGATATGGACTCACATGTGGGCCCAGATGATAATGCAGAGGTATTTGTTTCTTTGGTTCATCCCCACCATGGTTAAGGCACAAGTTGTAGTTTACCAAGAAATTTTAAGTAGGTCAGTGAAGGATGACAAGATCTCTGTGGAAGGAAGATCCCATCAAGGAATTCCATCTTGGCAAGGACACCTTTTGAATGATGAAAAACTCAGCATAACAAGAAAACGTTTTTTCTGTCTTAACATTAAAGTTGTCTGTAAATCGTTTGCCTTCTGCAGAATAATGCTCTTGTGGAAAACTATACATAAACAAGCTGAGATTATTATTATAAGAGTTTAG 876 0.4018 MSTPNYLLDLTEQICYVQCEFCTTILMVSVPCSSLSTVVTVRCGHCTSLLSVNMMRASFVPFHLLASLPHLEQEEGSPEENADKTSSDCEEDDAIPMSYAINKPPEKRQRSPSAYNRFIKEEIRRLKAENPDMAHKEAFSTAAKNVNNQNFLKILIQDCGPVSPELNLKEMRRTVVKQSKLWIWTHMWAQMIMQRYLFLWFIPTMVKAQVVVYQEILSRSVKDDKISVEGRSHQGIPSWQGHLLNDEKLSITRKRFFCLNIKVVCKSFAFCRIMLLWKTIHKQAEIIIIRV 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1167 291 PANTHER PROTEIN YABBY 6-RELATED 11 148 IPR006780 GO:0007275
Dere13g1167 291 Gene3D High mobility group box domain 100 157 IPR036910 -
Dere13g1167 291 SUPERFAMILY HMG-box 101 144 IPR036910 -
Dere13g1167 291 Pfam YABBY protein 11 146 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1167 Dere-ChrDere13 16205955 16208400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1167 2 145 C2C2-YABBY Transcription Factor Family AT1G23420 59.146 2.70e-53 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Dere13g1167 YABBY 7.7e-51 CL0114