Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1166 ATGGATATACTAGTTATTCTACATTACAACTTCAATGCACAAGATGGATGTACTACTAGGCTTGTAAAAGCTATCTACTGCCCTTTTAACAAATCCATCATATGCCTAGGCAACGCTCGGAACCAAAAATCCCGAATCGGCGACACCATGCAGATCTTCGTGAAAACCCTGACGGGTAAGACTATAACCCTCGAGGTTGAGTCTTCGGACACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCACCGGATCAGCAGCGTCTCATTTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCTTAGCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGTGCTCCGTCTCCGTGGTGGAGCCAAGAAGCGTAAGAAGAAGACCTACACCAAGCCCAAGAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCTGTTCTCCAATTTTACAAGGTCGATGATTCAGGTAAGGTCCAGAGGCTGAGGAAGGAGTGCCCCAATGCTGAGTGTGGGGCTGGAACTTTCATGGCCAACCACTTCGATCGCCATTACTGTGGCAAGTGTGGGATGACTTATGTCTACCAGAAGGCTGGTGGCGATTAA 618 0.4968 MDILVILHYNFNAQDGCTTRLVKAIYCPFNKSIICLGNARNQKSRIGDTMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGMTYVYQKAGGD 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1166 205 SMART Ribosomal_S27_2 151 196 IPR002906 GO:0003735|GO:0005840|GO:0006412
Dere13g1166 205 Pfam Ubiquitin family 52 123 IPR000626 GO:0005515
Dere13g1166 205 PRINTS Ubiquitin signature 81 101 IPR019956 -
Dere13g1166 205 PRINTS Ubiquitin signature 60 80 IPR019956 -
Dere13g1166 205 PRINTS Ubiquitin signature 102 123 IPR019956 -
Dere13g1166 205 SMART ubq_7 50 121 IPR000626 GO:0005515
Dere13g1166 205 SUPERFAMILY Zn-binding ribosomal proteins 149 202 IPR011332 GO:0006412
Dere13g1166 205 PANTHER UBIQUITIN 50 138 - -
Dere13g1166 205 Pfam Ribosomal protein S27a 151 196 IPR002906 GO:0003735|GO:0005840|GO:0006412
Dere13g1166 205 Gene3D - 130 203 IPR038582 -
Dere13g1166 205 FunFam Ubiquitin-40S ribosomal protein S27a 50 128 - -
Dere13g1166 205 SUPERFAMILY Ubiquitin-like 29 126 IPR029071 -
Dere13g1166 205 Gene3D - 50 129 - -
Dere13g1166 205 CDD Ubl_ubiquitin 50 125 - -
Dere13g1166 205 ProSitePatterns Ubiquitin domain signature. 76 101 IPR019954 -
Dere13g1166 205 ProSiteProfiles Ubiquitin domain profile. 50 125 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1166 Dere-ChrDere13 16183434 16187877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1166 50 203 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 95.455 1.05e-89 258