Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1158 ATGGAAATTACGAGTTCAGTTTTCTGGCTTCTGGGTTTGCTGCTTCTGGTGTTGATGGAGATTTCTTCTGCCGCGCTTTCTCCTTCTGGGATAAATTATGAAGTTGTAGCACTGATGGCCATAAAAAATGAATTACATGATCCCCACAGTGTACTGGAGAGTTGGGATATAAATTCTGTTGATCCTTGTAGCTGGAGGATGATTACTTGTTCCCCAGATGGCTACGTTTCTGCTTTAGGATTACCCAGTCAGAACTTGTCTGGTAAGCTATCTCCTGGGATTGGAAACCTGACTAACTTGCAATCTGTGTTGCTTCAGAACAATGCCATCTCTGGTCCAATTCCTGTTGCTATCGGAAAGCTGGAGAAGCTTCAGACACTTGATCTTTCCAATAATCTATTTAGTGGTGAGATGCCTAGTTCTCTGGGGAGCCTCAAGAACCTGAATTATCTGCGGTTGAATAATAACAGCCTTTCAGGAACCTGCCCTCAGTCTCTTGGCAACATTGAAGGTCTAACCCTTGTGGATCTCTCTTATAACAATCTGAGTGGTTCATTGCCCAGAATATCAGCAAGAACATTCAAGATTGTGGGAAATCCTTTAATTTGTGGCCCAAATGCTAATAACTGCTCTAATGTTCTGCCGGAGCCACTCTCCTTCCCACCTGATTCTTTAAGAGCAAAATCAGCCTCTGGAGCAAAAAGTCATCATGTGGCAGTTGCTTTTGGAGCAAGTCTTGGATCTGCTTTTGTCATTGTGATTATTGCTGTGTTTATTGTTTGGTTGCGGTATAGACACAACAAACAGATATTCTTTGATGTTAATGAGCAATATGATCCAGAGGTGCGCCTTGGCCATTTGAGTAGGTATTCATTCAAAGAGCTTCGAGCTGCAACGGACCATTTCAGTTCAAAGAACATTATAGGAAAGGGTGGCTTTGGAATAGTCTACAAGGGGTGCTTCAATGATGGCTCTGTTGTAGCAGTCAAAAGGTTGAAAGACTATAATGCCGGTGGGGGTGAGATCCAATTTCAGACAGAAGTTGAGACCATAAGTTTGGCTGTCCACCGGAATCTTTTGCGACTTTGTGGATTTTGCAGTACTCAAAATGAAAGGCTCCTCGTGTATCCATACATGCCCAATGGCAGCGTAGCCTCTCGATTAAAAGATCATATCCATGGTCGACCAGCCTTAGACTGGGCAAGGAGGAAGAGAATAGCATTGGGTACAGCCAGAGGGTTGGTTTACTTGCACGAGCAATGTGATCCTAAAATCATTCACCGTGATGTGAAAGCAGCCAACATATTGCTGGATGAAGACTTTGAAGCAGTTGTTGGTGATTTTGGTTTGGCAAAGCTTCTGGATCACAGAGACTCTCATGTGACTACAGCCGTGCGTGGCACTGTTGGTCATATTGCTCCAGAATACCTATCTACAGGTCAGTCATCAGAAAAGACCGATGTGTTTGGGTTTGGAATCTTGCTGCTTGAGCTGATCACAGGTCATAAGGCTTTGGATTTTGGACGAGCAGCAAATCAGAAAGGTGTAATGCTTGATTGGGTTAAGAAGCTCCATCAAGATGGAAGATTAAGTCAAATGGTTGATAAAGATTTGAAGGGCCACTTCAATGCAGATGAACTGGAAGAAATGGTTCAGGTTGCTCTACTATGTACACAATTTGATCCATTGCACCGGCCCAAGATGTCAGAAGTATTGAAGATGTTGGAAGGTGATGGCTTAGCCGAGAGGTGGGAGGAGGCCTCAAAGAAGACGGAGACACCGAGGTTCAGGTCTTGTGAGAACCCTCCTCTGAAATATTCAGATTTTATAGAAGAATCTTCACTGATATTAGAAGCTATGGAGCTTTCTGGCCCTAGGTGA 1881 0.4375 MEITSSVFWLLGLLLLVLMEISSAALSPSGINYEVVALMAIKNELHDPHSVLESWDINSVDPCSWRMITCSPDGYVSALGLPSQNLSGKLSPGIGNLTNLQSVLLQNNAISGPIPVAIGKLEKLQTLDLSNNLFSGEMPSSLGSLKNLNYLRLNNNSLSGTCPQSLGNIEGLTLVDLSYNNLSGSLPRISARTFKIVGNPLICGPNANNCSNVLPEPLSFPPDSLRAKSASGAKSHHVAVAFGASLGSAFVIVIIAVFIVWLRYRHNKQIFFDVNEQYDPEVRLGHLSRYSFKELRAATDHFSSKNIIGKGGFGIVYKGCFNDGSVVAVKRLKDYNAGGGEIQFQTEVETISLAVHRNLLRLCGFCSTQNERLLVYPYMPNGSVASRLKDHIHGRPALDWARRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHQDGRLSQMVDKDLKGHFNADELEEMVQVALLCTQFDPLHRPKMSEVLKMLEGDGLAERWEEASKKTETPRFRSCENPPLKYSDFIEESSLILEAMELSGPR 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1158 626 ProSiteProfiles Protein kinase domain profile. 302 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1158 626 SUPERFAMILY L domain-like 32 193 - -
Dere13g1158 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 586 - -
Dere13g1158 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Dere13g1158 626 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Dere13g1158 626 SUPERFAMILY Protein kinase-like (PK-like) 279 576 IPR011009 -
Dere13g1158 626 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 212 - -
Dere13g1158 626 SMART serkin_6 302 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1158 626 Gene3D Transferase(Phosphotransferase) domain 1 379 594 - -
Dere13g1158 626 Pfam Protein kinase domain 303 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1158 626 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Dere13g1158 626 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Dere13g1158 626 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Dere13g1158 626 FunFam Somatic embryogenesis receptor-like kinase 1 379 595 - -
Dere13g1158 626 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1158 Dere-ChrDere13 16080763 16085295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1158 67 626 Receptor kinase-like Gene Family AT1G60800 74.087 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Dere13g1158 Pkinase 5.4e-44 CL0016