Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1156 ATGGATGAAAACTATGGAGTGTCGTTGACGACGGAGTACTCTGATAAGGCCTTGATGACGCCGGAGAACCTGATATTCGCTGCCGATTACCAGAGCTTCCTCATGTCCTCCGACAACTTCCTTGATCGGAATTCGATGTTCGAATCCGACGACTTGCTCTCCGCGGTAACCCAAGCTGAGCAGCCGTCCATCGCCTCTGATATTCAGCCTCAAGACGACGCCTCCACTCTCATCAAGGCCAAAATCGCTTCTCATCCTCACTACCCTCGCCTCCTCCAAGCTTTCATTGATTGCCAGAAGGTAGGAGCACCTCAGGAAATCGCATGTCTGTTAGACAAAATCCAGGGAGAAAACAACATTAGTAAGCAAGACGTTGTTTCAACGTGCTTCGGTGCTGATCCCGAGCTCGACGAGTTCATGGAAACCTATTGCAACCTGTTGGTGAAGTATACATCTGATCTTGCGCAGCCTTTTGACGAAGCAACTGCTTTCCTCAATGAAATAGAAATGCAGTTCACGGATCTATGTTGTGGTGCTTCCGTTTCAACTCTTTCTGATGATAGGGGTGTATCTTCAGAAGAAGATTTTAGTGCAGGGGATGGTGATGTACAAGATGGTCAATTGCAGGGTGAAAATCGAGAGCTCAAGGATAGGCTTTTACATAAGTTTGGGAATCATATTAGTACTTTAAAATTGGAGTTCTCGAAGAAGAAAAAGAAGGGTAAGCTACCCAAAGAAGCCAGACAAGCACTTCTTGAGTGGTGGAATCTTCACTACAAGTGGCCTTATCCAACGGAAGCTGATAAGATTGCATTGGCTAAGTCAACGGGGCTAGACCAGAAGCAAATCAACAATTGGTTTATTAATCAAAGGAAACGTCACTGGAAACCATCTGAGAACATGCAGATTTCTGTAATGGATAGTATGACTGGACAGTTCTTCACTGATGCATGA 954 0.4539 MDENYGVSLTTEYSDKALMTPENLIFAADYQSFLMSSDNFLDRNSMFESDDLLSAVTQAEQPSIASDIQPQDDASTLIKAKIASHPHYPRLLQAFIDCQKVGAPQEIACLLDKIQGENNISKQDVVSTCFGADPELDEFMETYCNLLVKYTSDLAQPFDEATAFLNEIEMQFTDLCCGASVSTLSDDRGVSSEEDFSAGDGDVQDGQLQGENRELKDRLLHKFGNHISTLKLEFSKKKKKGKLPKEARQALLEWWNLHYKWPYPTEADKIALAKSTGLDQKQINNWFINQRKRHWKPSENMQISVMDSMTGQFFTDA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1156 317 SMART ELK_2 214 235 IPR005539 GO:0003677
Dere13g1156 317 SMART HOX_1 236 301 IPR001356 GO:0003677
Dere13g1156 317 ProSitePatterns 'Homeobox' domain signature. 272 295 IPR017970 GO:0000981|GO:0006355
Dere13g1156 317 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 82 304 - -
Dere13g1156 317 ProSiteProfiles ELK domain profile. 214 234 IPR005539 GO:0003677
Dere13g1156 317 Pfam Homeobox KN domain 254 293 IPR008422 GO:0003677|GO:0006355
Dere13g1156 317 MobiDBLite consensus disorder prediction 185 207 - -
Dere13g1156 317 Pfam ELK domain 214 235 IPR005539 GO:0003677
Dere13g1156 317 FunFam Homeobox protein knotted-1-like 2 239 301 - -
Dere13g1156 317 Pfam KNOX2 domain 130 176 IPR005541 GO:0003677|GO:0005634
Dere13g1156 317 Gene3D - 233 306 - -
Dere13g1156 317 Pfam KNOX1 domain 78 118 IPR005540 GO:0003677|GO:0005634
Dere13g1156 317 SMART KNOX1_2 76 120 IPR005540 GO:0003677|GO:0005634
Dere13g1156 317 ProSiteProfiles 'Homeobox' domain profile. 234 297 IPR001356 GO:0003677
Dere13g1156 317 SUPERFAMILY Homeodomain-like 235 310 IPR009057 -
Dere13g1156 317 SMART KNOX2_2 126 177 IPR005541 GO:0003677|GO:0005634
Dere13g1156 317 CDD homeodomain 246 298 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1156 Dere-ChrDere13 15989996 15994972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1156 1 316 Homeobox Transcription Factor Family AT1G23380 64.024 4.67e-140 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dere13g1156 KNOX2 9e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere09g1536 09 19713692 19724017 Dere13g1156 13 15989996 15994972 CCT