Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1153 ATGAAGAGAGTGAAACCCAATATTAGGGTATTAGGACTAAATTTTTGGTTGCTTCGTAAATCCAAATTTGAGGAAGTTGTCCTTCTTGAGGTAAATGCCATATCCGCTGAAAAGCAGGAAGCCTTATTTCCATCTTCAATGTCTAGTGCAACCCTCCTACTTCTCTACCTTCTTCACTTTGCAATTCCTTCTCTTTCTGACCCAAGGACGACAGAAGCGGCTCTTATGTGCACTAACAGAACTGCTTCAATGGCCGAACGCAAAATCTTCATAGCAAATTTCCTAGATGCTTTAGAAGCCTTGACCCCTTCAATTGCAAGACAAAGATACGCATCTGCTATTAAAGGGACTGGAAATTCCGTTGTTTATGCTTTTTCGGAGTGCATGAAAGATGTTTATGGATCGGATTGCAATGTCTGCGTCTCCCAGATCAAGACCCAAGTCCTAAGGTGTTTACCATATCAGAGAGGAATTCGTGGGGGTAGGCTATTCTTTGATGGGTGTTATATCAGGTACGATGACTACAACTTCTTCAACGAAAGTCTCAGTGATCAAGACAGAACTGTGTGTGGGAACAGTGAGTTTGGTGGGAATCAGAGTGTTTATGAAGCTACTGCTGTGGAGTTAGTGAGGAATTTGAGTGTGGAAGCATGGAAGAATGATGGGTTTTCTGTGGGTTTTTTGAGCAGAAATGGTGTGGTGGTTTATGGGTTGGCTCAATGTTGGGAATTTGTTAATGGGAGTGCTTGTGAGAGATGTTTGGCAGAAGCTGTTAAAAGGATTGGTTCTTGTACTCCAAAAGATGAAGGGAGGGTGTTAAATGCTGGTTGTTATTTGAGGTATTCAAATCAAATGTTCTATGGCAATTCAACCAATGATCCGCCTACAGGAAACCAAGGGCACGGCCATTCAATTATAGTGCTGGCTGCATCAAGTGCTGGGTTGGCTCTTCTGCTGATTGTTGCAACAGTTGTTTTCTTTGCAAGGAAGATTGTGCTGAGGAGGAAGAGAGAAAGAAGACAGTTTGGTGCACTTTTGAACACAGTGTACAAATCCAAGCTTTTTATGCCATATGAAGTTCTTGAAAGAGCCACAAATTACTTCAATGCCTCCAATAAGCTAGGACAAGGCGGTTCAGGTTCAGTTTATAAAGGAGTTCTGCCCGATGGGAATACTGTAGCCATAAAAAGGCTTAGCTTTCACACAAGACAATGGGTAGATCATTTCTTCAATGAGGTCAATTTGATAACTGGCATTCATCACAAAAATCTTGTAAAGCTTCTAGGGTGCAGCATTACAGGACCTGAAAGCCTTCTTGTTTATGAATACGTGCCAAATCAAAGCCTTCATGATCACTTTTCTGCTAAGCAAAAATGTCAACCCTTGACTTGGGAAGCCCGGCGTAAGATCATATTGGGAACTGCAGAGGGTTTGGCATATCTTCACGATGAATCAAAAGTGAGAATCATTCACAGAGATATAAAACTAAGCAATATTCTGCTTGACAAGGACTTCACACCGAAGATAGCTGATTTTGGACTTGTTAGATTATTTCCAGAAGATAAGACTCACATTAGCACTACCATTGCTGGTACATTGGGTTACATGGCTCCAGAGTATGTAGTTCTTGGGAAGTTGACGAGCAAAGCTGATGTTTACAGTTTCGGAGTTCTACTGATTGAAATTATATCTGGAAAAAGGAGCAATTCTTTTGTTCAAAATTCATCCTCCATCCTCCAAGTGGTTTGGAATCTTCATAGGTCAGGCAAGACATGTAACATAGTTGATCCGAGCCTTGAGGGTAATTACCCGGCTGAGGAAACATTTCGGCTACTTCAGATAGGGTTGCTTTGTGTGCAAGCATCAGCCGAGCTGCGACCTTCAATGTCAGAAGTTGTGAGAATGATCACCAACAATCATCAAATTCCTCAGCCAACACAACCTCCGTTTCTTGTTTCAAGTAGTGTAGAATGCAGCAAATCTGAATATGACTTTCAGGCTGCATCCAATACGCATTCTTCAGAGGACAGCATGACCGAAAGTCTTATTCCTTCCAGATGA 2061 0.4182 MKRVKPNIRVLGLNFWLLRKSKFEEVVLLEVNAISAEKQEALFPSSMSSATLLLLYLLHFAIPSLSDPRTTEAALMCTNRTASMAERKIFIANFLDALEALTPSIARQRYASAIKGTGNSVVYAFSECMKDVYGSDCNVCVSQIKTQVLRCLPYQRGIRGGRLFFDGCYIRYDDYNFFNESLSDQDRTVCGNSEFGGNQSVYEATAVELVRNLSVEAWKNDGFSVGFLSRNGVVVYGLAQCWEFVNGSACERCLAEAVKRIGSCTPKDEGRVLNAGCYLRYSNQMFYGNSTNDPPTGNQGHGHSIIVLAASSAGLALLLIVATVVFFARKIVLRRKRERRQFGALLNTVYKSKLFMPYEVLERATNYFNASNKLGQGGSGSVYKGVLPDGNTVAIKRLSFHTRQWVDHFFNEVNLITGIHHKNLVKLLGCSITGPESLLVYEYVPNQSLHDHFSAKQKCQPLTWEARRKIILGTAEGLAYLHDESKVRIIHRDIKLSNILLDKDFTPKIADFGLVRLFPEDKTHISTTIAGTLGYMAPEYVVLGKLTSKADVYSFGVLLIEIISGKRSNSFVQNSSSILQVVWNLHRSGKTCNIVDPSLEGNYPAEETFRLLQIGLLCVQASAELRPSMSEVVRMITNNHQIPQPTQPPFLVSSSVECSKSEYDFQAASNTHSSEDSMTESLIPSR 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1153 686 ProSiteProfiles Gnk2-homologous domain profile. 72 177 IPR002902 -
Dere13g1153 686 ProSitePatterns Protein kinases ATP-binding region signature. 374 396 IPR017441 GO:0005524
Dere13g1153 686 Pfam Protein kinase domain 369 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1153 686 SUPERFAMILY Protein kinase-like (PK-like) 352 662 IPR011009 -
Dere13g1153 686 FunFam Cysteine-rich receptor-like protein kinase 2 444 644 - -
Dere13g1153 686 Pfam Salt stress response/antifungal 194 284 IPR002902 -
Dere13g1153 686 Pfam Salt stress response/antifungal 77 175 IPR002902 -
Dere13g1153 686 SMART serkin_6 368 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1153 686 FunFam Cysteine-rich receptor-like protein kinase 2 334 443 - -
Dere13g1153 686 ProSiteProfiles Protein kinase domain profile. 368 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1153 686 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 123 673 - -
Dere13g1153 686 Gene3D - 71 177 IPR038408 -
Dere13g1153 686 Gene3D - 185 286 IPR038408 -
Dere13g1153 686 MobiDBLite consensus disorder prediction 666 686 - -
Dere13g1153 686 Gene3D Phosphorylase Kinase; domain 1 329 443 - -
Dere13g1153 686 CDD STKc_IRAK 374 638 - -
Dere13g1153 686 ProSiteProfiles Gnk2-homologous domain profile. 184 286 IPR002902 -
Dere13g1153 686 Gene3D Transferase(Phosphotransferase) domain 1 444 647 - -
Dere13g1153 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
Dere13g1153 686 FunFam Cysteine-rich receptor-like protein kinase 3 186 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1153 Dere-ChrDere13 15966913 15973567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1153 63 533 Receptor kinase-like Gene Family AT1G70530 59.958 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere13g1153 Pkinase 1.3e-48 CL0016