Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1141 ATGGCTTCCTTTAATCTCCTTCCTTCTTTAGTTCTTCTCCCTCTGCTGGCAACCTTTTTTGTTACAGTTTTTTCCTTGCGAACTTCCATTAAAACATCCTATATGGTCCCTTTTAAATGCTCTGCTGAAATCCGCACATGTAATGCCTCACTCTACCACATAAATCATGGTCTTAACATAGAAGAAATAGCCTCTCTTTACTCTGTTAGTTCAACCCAAATTGAGCCAATAACGCGTGGCACCAACCAAGATTACCTCATCACAGTACCTTGTTCTTGTGAAATCATCAGTGACCTTAGTGGATATTTCTTTGACACAACCTACACAGTGAAGCAAAATCAGACATTTATGAATATTTCAAACTTCAATTACAGTGGACAAGCCTGGCCTATAGATAATAAGGATGAGTTGTTCCCAGATGAAAAATTGACAATACATCTTCCCTGTGGGTGTACAGAAAGTGACTCTCAAATCGTTGTGACATATACAGTTCAGCAGAATGATACTACATCAACAATTGCTAACCTGCTATCAGCTACACTTACTGGCATGCAGAGCATGAATGAAAATTTAGCTAAGAACCCTTCATTCATAGATTTGGGTTGGGTATTATATGTTCCTAAGGATTTGAATGGGATTCCATCTTCAAAAGGAAGTGGAAACAAACACACACATGATATTATCATTGGCATCTTAGTGGGTGTGACATTACTTTCAGTTATTACAATTATCATTCTCATTCTCTGGAGAAAAAGATCCGCTGAAACCAGCAAAGTAGATCTAAAAGCAGTATCTAAAAGATCAAACCCGAAAGCATTATCTAAAATATCAATATCCAATAAAACTCCTTCCTTGAAGAGCCATCCCCTTCATAATGAAACTATTGAAGAGGGAATATCGTTGGAATCAGAAAGACCAGTAACATTTTATCTTGAGGAGATTGAAGGGGCCATAAGTAACTTGAAAGAAAGTAAAATAATAGGAAAGGGCGGATATGGAACTGTGTATTTTGGAATGTTAGGGGGAAAGGAGGTTGCTATAAAAGAGATGAGGTCTAATAAATCGAAAGAGTTCTATGCAGAACTCAAGGTCTTATGTAGGATCCATCATATCAACATAGTGGAGCTATTGGGATATGCCAGTGGAGAAGACAACCTCTATCTGGTGTATGAGTATGTTTCAAATGGATCTCTCAGTGACCATCTTCATCATCCATTTCTAAAAGATCATCAACCTCTTTCATGGACTGCTAGAGCACAGATTTCTCTTGATGCTGCAAAAGGTATTGAATACATACATGATTACACAATAGCACGATACGTGCATCGTGATATAAAGACTGGTAATATCCTCCTCGATGGGAAGCTCAGAGCAAAGATAGCCGATTTTGGACTAGTAAAGCTGTTAGAACGAACAAATGATGAAGATTTTATGGCAACAAGGCTTGTTGGAACACCTGGCTATCTTGCACCAGAATCTGTGAAGGAGCTTCAGGTGACAGCAAAAACTGATGTATTTGCATTTGGAGTGGTTCTAGCAGAGCTAGTAACAGGAAAACATGCCCTATTTCGCGACAGTCGAGAGACCAGCAGAATGAGATCACTTATTTCAGTTATTAATGAAGTATTCAAAGCTGATGATCCAGAGAGTGCTTTAGAGGATATCATAGACAAAAATCTACGAGATACCTATCCTATGGAAGATGTCTTCAAGATGGCAGAAATAGCTGAACGGTGCATGCGAGAAGATCCAATAGAGAGGCCAGAAATGAGAGAGATCGTTGGGATGTTGTCTCAGATTGTGAGGTCCTCCACAGAGTGGGAAGCATCATTAGGTGGAGACAGCCAGGTCTTCAGTGGCTTGTGTACTGGAAGATGA 1878 0.3935 MASFNLLPSLVLLPLLATFFVTVFSLRTSIKTSYMVPFKCSAEIRTCNASLYHINHGLNIEEIASLYSVSSTQIEPITRGTNQDYLITVPCSCEIISDLSGYFFDTTYTVKQNQTFMNISNFNYSGQAWPIDNKDELFPDEKLTIHLPCGCTESDSQIVVTYTVQQNDTTSTIANLLSATLTGMQSMNENLAKNPSFIDLGWVLYVPKDLNGIPSSKGSGNKHTHDIIIGILVGVTLLSVITIIILILWRKRSAETSKVDLKAVSKRSNPKALSKISISNKTPSLKSHPLHNETIEEGISLESERPVTFYLEEIEGAISNLKESKIIGKGGYGTVYFGMLGGKEVAIKEMRSNKSKEFYAELKVLCRIHHINIVELLGYASGEDNLYLVYEYVSNGSLSDHLHHPFLKDHQPLSWTARAQISLDAAKGIEYIHDYTIARYVHRDIKTGNILLDGKLRAKIADFGLVKLLERTNDEDFMATRLVGTPGYLAPESVKELQVTAKTDVFAFGVVLAELVTGKHALFRDSRETSRMRSLISVINEVFKADDPESALEDIIDKNLRDTYPMEDVFKMAEIAERCMREDPIERPEMREIVGMLSQIVRSSTEWEASLGGDSQVFSGLCTGR 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1141 625 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 26 619 IPR044812 GO:0019199|GO:0045087
Dere13g1141 625 ProSiteProfiles LysM domain profile. 160 206 IPR018392 -
Dere13g1141 625 ProSiteProfiles Protein kinase domain profile. 321 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1141 625 FunFam PTI1-like tyrosine-protein kinase 3 393 611 - -
Dere13g1141 625 ProSitePatterns Protein kinases ATP-binding region signature. 327 348 IPR017441 GO:0005524
Dere13g1141 625 Gene3D LysM domain 150 212 IPR036779 -
Dere13g1141 625 Pfam Protein kinase domain 322 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1141 625 Gene3D Transferase(Phosphotransferase) domain 1 393 615 - -
Dere13g1141 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Dere13g1141 625 SMART serkin_6 321 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere13g1141 625 SUPERFAMILY Protein kinase-like (PK-like) 306 603 IPR011009 -
Dere13g1141 625 Gene3D Phosphorylase Kinase; domain 1 291 392 - -
Dere13g1141 625 SUPERFAMILY LysM domain 160 207 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1141 Dere-ChrDere13 15807931 15812982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1141 301 625 Receptor kinase-like Gene Family AT1G51940 50.301 5.80e-111 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Dere13g1141 Pkinase 2.6e-50 CL0016