Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere13g1119 ATGGAGGAAGCACTGAGGAGGCTAAACGGGCTAGCCCCGATTCCCGAACCTGACCCGCAGGACTCCATCTCCGATCACCCGAAGAAGTGCCCAACCGCCACCACCAACAAGAGGACGGTGAGGGAAAACGGCGGCGCAATGAGGTACCGAGGAGTACGACGCAGGCCGTGGGGCCGTTACGCGGCGGAGATAAGAGACCCCCAATCCAAGGAGCGTCGGTGGCTCGGCACCTTCGACACGGCGGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCCGGGCCATGCGTGGCCTCAAAGCTCGCACCAATTTCGTATACCCAACCTCCCCTCCTCCCTCTGCACCTACCGAACATCTCTTCCCTCATTTCGCCTTCCCCAAACAATCCCAGCATCAAATAAACAAGAACCTAAACCCCCATAACCGCCATTTGGGTTGGCCTTCATCTTATCCTAACCCTCATGTAGCTGACTTTTCATCCTCCGCTAATTCTACACTCAATATGCTTTTCTTTCGTGACTACCTGAACTCTGGTTCCAACCCATCTTTGGTTTCTTCTGCTCAGCATCTTCACAACCCTTTGAACAAGGTCACTTGTTCCTGTTCTTGTTCCTCGTCTTCCACATCCTTACCCACGTCTAGTTCTGTCTCAGGCTGCTGTGCCATGAATTCTTCTGGGGGCAATTTAATGAGTTCCAAAATCCCTGAAGCTGTTGAGGAGTCTGAATTCTTCCCAAGAGAGGCTTCGGATTCTGGATTGTTGGAAGAGATAGTTAACAGGTTCTTGCCAAAATCGAAGCCCGACCAGTTGGAGACTTCAGCGACAGCTCAGACTGTGTCTTTGTTCACCCCACAGTTGCTTCCTCCTCAGCCAGTGTCTGATCATGACATGTTAGCTTCCACCACTTCTCTGTGCTATGGTAATGTTACGAAGAGGGGGATGACCAAGACTGAGGATTTTGGTGTGTCTTTTGATCACCAAGGTTTCCCCATGCAGCAATATGACAGCTTTCGAAGTGGGTACAATACTGCACAAGGCATACCTCTTAGCAACGACCCCCACCTGATGATGAATGCGGAGTACTCCATAATGGATGATATTTTCCATTACCCAGAGCTTCTTGATGAATTTTCGGCTAGGATGCAAAATGCTTAA 1155 0.5126 MEEALRRLNGLAPIPEPDPQDSISDHPKKCPTATTNKRTVRENGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPPSAPTEHLFPHFAFPKQSQHQINKNLNPHNRHLGWPSSYPNPHVADFSSSANSTLNMLFFRDYLNSGSNPSLVSSAQHLHNPLNKVTCSCSCSSSSTSLPTSSSVSGCCAMNSSGGNLMSSKIPEAVEESEFFPREASDSGLLEEIVNRFLPKSKPDQLETSATAQTVSLFTPQLLPPQPVSDHDMLASTTSLCYGNVTKRGMTKTEDFGVSFDHQGFPMQQYDSFRSGYNTAQGIPLSNDPHLMMNAEYSIMDDIFHYPELLDEFSARMQNA 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere13g1119 384 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Dere13g1119 384 FunFam Ethylene-responsive transcription factor 2 47 106 - -
Dere13g1119 384 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Dere13g1119 384 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Dere13g1119 384 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Dere13g1119 384 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Dere13g1119 384 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Dere13g1119 384 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 35 222 - -
Dere13g1119 384 MobiDBLite consensus disorder prediction 1 35 - -
Dere13g1119 384 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Dere13g1119 384 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere13g1119 Dere-ChrDere13 15544327 15545481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere13g1119 1 266 AP2-EREBP Transcription Factor Family AT1G12980 39.416 3.43e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere13g1119 AP2 2.8e-12 CL0081